biology/py-macs3 - The NetBSD Packages Collection

Peak caller aimed at transcription factor binding sites 

MACS (Model-based Analysis of ChIP-Seq) is a tool for identifying
transcription factor (TF) binding sites.   Such sites are generated
by CHiP-Seq (CHromatin immuno-Precipitation sequencing) and ATAC-Seq
(Assay for Transposase Accessible Chromatin Sequencing).  MACS
identifies "peaks" in the genome sequence, which are areas enriched
in bound TFs or accessible chromatin.

Build dependencies

devel/simde devel/py-setuptools devel/py-wheel devel/py-build misc/py-installer pkgtools/mktools shells/bash pkgtools/cwrappers

Runtime dependencies

math/py-hmmlearn devel/py-cykhash lang/python311 lang/python311 math/py-numpy devel/py-cython math/py-numpy

Binary packages

OSArchitectureVersion
NetBSD 10.0aarch64py310-macs3-3.0.1.tgz
NetBSD 10.0aarch64py311-macs3-3.0.1.tgz
NetBSD 10.0aarch64py312-macs3-3.0.1.tgz
NetBSD 10.0aarch64py39-macs3-3.0.1.tgz
NetBSD 10.0i386py310-macs3-3.0.1.tgz
NetBSD 10.0i386py311-macs3-3.0.1.tgz
NetBSD 10.0i386py312-macs3-3.0.1.tgz
NetBSD 10.0i386py39-macs3-3.0.1.tgz
NetBSD 10.0x86_64py310-macs3-3.0.1.tgz
NetBSD 10.0x86_64py311-macs3-3.0.1.tgz
NetBSD 10.0x86_64py312-macs3-3.0.1.tgz
NetBSD 10.0x86_64py39-macs3-3.0.1.tgz
NetBSD 9.0i386py310-macs3-3.0.1.tgz
NetBSD 9.0i386py311-macs3-3.0.1.tgz
NetBSD 9.0i386py39-macs3-3.0.1.tgz
NetBSD 9.0x86_64py310-macs3-3.0.1.tgz
NetBSD 9.0x86_64py311-macs3-3.0.1.tgz
NetBSD 9.0x86_64py312-macs3-3.0.1.tgz
NetBSD 9.0x86_64py39-macs3-3.0.1.tgz
NetBSD 9.3x86_64py310-macs3-3.0.1.tgz
NetBSD 9.3x86_64py311-macs3-3.0.1.tgz
NetBSD 9.3x86_64py312-macs3-3.0.1.tgz
NetBSD 9.3x86_64py39-macs3-3.0.1.tgz

Binary packages can be installed with the high-level tool pkgin (which can be installed with pkg_add) or pkg_add(1) (installed by default). The NetBSD packages collection is also designed to permit easy installation from source.

Available build options

(none)

Known vulnerabilities

The pkg_admin audit command locates any installed package which has been mentioned in security advisories as having vulnerabilities.

Please note the vulnerabilities database might not be fully accurate, and not every bug is exploitable with every configuration.

Problem reports, updates or suggestions for this package should be reported with send-pr.