class Bio::EMBLDB
Public Class Methods
new(entry, tagsize)
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The entire entry is passed as a String. The length of the tag field is passed as an Integer. Parses the entry roughly by the entry2hash method and returns a database object.
# File lib/bio/db.rb, line 306 def initialize(entry, tagsize) @tagsize = tagsize @orig = entry2hash(entry.strip) # Hash of the original entry @data = {} # Hash of the parsed entry end
Private Instance Methods
entry2hash(entry)
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Returns the contents of the entry as a Hash.
# File lib/bio/db.rb, line 315 def entry2hash(entry) hash = Hash.new { |h,k| h[k] = '' } entry.each_line do |line| tag = tag_get(line) next if tag == 'XX' tag = 'R' if tag =~ /^R./ # Reference lines hash[tag].concat line end return hash end