class Bio::SQL::Location
Public Instance Methods
sequence()
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# File lib/bio/io/biosql/ar-biosql.rb, line 117 def sequence seq="" unless self.seqfeature.bioentry.biosequence.seq.nil? seq=Bio::Sequence::NA.new(self.seqfeature.bioentry.biosequence.seq[start_pos-1..end_pos-1]) seq.reverse_complement! if strand==-1 end return seq end
to_s()
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# File lib/bio/io/biosql/ar-biosql.rb, line 108 def to_s if strand==-1 str="complement("+start_pos.to_s+".."+end_pos.to_s+")" else str=start_pos.to_s+".."+end_pos.to_s end return str end