Uses of Class
org.biojava.bio.molbio.RestrictionEnzyme

Packages that use RestrictionEnzyme
org.biojava.bio.molbio The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR. 
org.biojava.bio.seq.impl Standard in-memory implementations of Sequence and Feature
 

Uses of RestrictionEnzyme in org.biojava.bio.molbio
 

Fields in org.biojava.bio.molbio declared as RestrictionEnzyme
 RestrictionEnzyme RestrictionSite.Template.enzyme
          enzyme RestrictionEnzyme field.
 

Methods in org.biojava.bio.molbio that return RestrictionEnzyme
 RestrictionEnzyme RestrictionSite.getEnzyme()
          getEnzyme returns the enzyme which cuts at this site.
static RestrictionEnzyme RestrictionEnzymeManager.getEnzyme(String name)
          getEnzyme returns an enzyme by name.
 

Methods in org.biojava.bio.molbio with parameters of type RestrictionEnzyme
 void RestrictionMapper.addEnzyme(RestrictionEnzyme enzyme)
          addEnzyme adds an enzyme to be searched for in the Sequence.
static Annotation RestrictionEnzymeManager.getAnnotation(RestrictionEnzyme enzyme)
          getAnnotation returns an immutable, static annotation describing the enzyme.
static Pattern[] RestrictionEnzymeManager.getPatterns(RestrictionEnzyme enzyme)
          getPatterns returns two Pattern objects for an enzyme, one matches the forward strand and one the reverse.
static String RestrictionEnzymeManager.getSuppliers(RestrictionEnzyme enzyme)
          getSuppliers returns a string describing the suppliers of this enzyme according to REBASE encoding for commercial sources or an empty String if the enzyme is not commecially available.
static void RestrictionEnzymeManager.register(RestrictionEnzyme enzyme, Set isoschizomers)
          register regisiters a new RestrictionEnzyme with the manager.
 void RestrictionMapper.removeEnzyme(RestrictionEnzyme enzyme)
          removeEnzyme removes an enzyme from those to be searched for in the Sequence.
 

Uses of RestrictionEnzyme in org.biojava.bio.seq.impl
 

Methods in org.biojava.bio.seq.impl that return RestrictionEnzyme
 RestrictionEnzyme SimpleRestrictionSite.getEnzyme()