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Packages that use org.biojava.utils | |
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org.biojava.bio | The core classes that will be used throughout the bio packages. |
org.biojava.bio.alignment | Classes to generate and describe sequence alignments. |
org.biojava.bio.annodb | Databases of generic structured data (annotation) objects. |
org.biojava.bio.dist | Probability distributions over Alphabets. |
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms. |
org.biojava.bio.gui.sequence | Graphical displays of biological sequences and associated annotations. |
org.biojava.bio.molbio | The classes and interfaces in this package cover common molecular biological techniques such as restriction digests and PCR. |
org.biojava.bio.program.das | Development client for the Distributed Annotation System. |
org.biojava.bio.program.gff | GFF manipulation. |
org.biojava.bio.program.gff3 | Support for reading and writing GFF3. |
org.biojava.bio.program.hmmer | Tools for working with profile Hidden Markov Models from the HMMer package. |
org.biojava.bio.program.homologene | Support classes for Homologene data. |
org.biojava.bio.program.indexdb | A flat-file ascii index of ascii flat files as per the OBDA specification. |
org.biojava.bio.program.phred | Parser for Phred output |
org.biojava.bio.program.tagvalue | Process files as streams of records, each with tags with values. |
org.biojava.bio.program.unigene | Objects for representing Unigene clusters. |
org.biojava.bio.program.xff | Event-driven parsing system for the Extensible Feature Format (XFF). |
org.biojava.bio.proteomics | Utilities to aid in performing various physical analysis of proteins. |
org.biojava.bio.search | Interfaces and classes for representing sequence similarity search results. |
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects. |
org.biojava.bio.seq.db | Collections of biological sequence data. |
org.biojava.bio.seq.db.biofetch | Client for the OBDA BioFetch protocol. |
org.biojava.bio.seq.db.biosql | General purpose Sequence storage in a relational database. |
org.biojava.bio.seq.db.flat | Support for OBDA flatfile databases. |
org.biojava.bio.seq.distributed | Sequences and SequenceDBs which are composed from data taken from a number of data sources. |
org.biojava.bio.seq.homol | The classes and interfaces for defining sequence similarity and honology. |
org.biojava.bio.seq.impl | Standard in-memory implementations of Sequence and
Feature . |
org.biojava.bio.seq.io | Classes and interfaces for processing and producing flat-file representations of sequences. |
org.biojava.bio.seq.projection | Code for projecting Feature objects and systematically altering their properties. |
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
org.biojava.bio.taxa | Taxonomy object for representing species information. |
org.biojava.ontology | A general-purpose API for ontologies. |
org.biojava.utils | Miscellaneous utility classes used by other BioJava components. |
org.biojava.utils.cache | A simple cache system with pluggable caching behaviours. |
org.biojava.utils.process | Classes and interfaces to execute external processes and to handle its input and output streams in multiple threads. |
org.biojavax | The Biojava extensions packages, classes that extend the core biojava functionality |
org.biojavax.bio | Classes to represent biological entities and their relationships. |
org.biojavax.bio.db | Interactions between biojavax objects and a DB. |
org.biojavax.bio.db.biosql | Interface between biojava and biosql databases |
org.biojavax.bio.db.ncbi | Interfaces to NCBI data. |
org.biojavax.bio.seq | Rich implementations of Sequences, Locations and Features. |
org.biojavax.bio.taxa | Objects that model the NCBI taxonomy schema as described in the BioSQL schema. |
org.biojavax.ga | Classes to provide a genetic algorithm framework |
org.biojavax.ga.functions | GA functions |
org.biojavax.ga.impl | Default implementations and abstract classes. |
org.biojavax.ontology | Extensions to the biojava ontology model that represent BioSQL ontology. |
Classes in org.biojava.utils used by org.biojava.bio | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
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ChangeEvent
Event which encapsulates a change in any mutable BioJava object. |
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ChangeForwarder
This is a ChangeListener that is designed to adapt events of one type from one source to events of another type emitted by another source. |
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ChangeListener
Interface for objects which listen to ChangeEvents. |
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ChangeSupport
A utility class to provide management for informing ChangeListeners of ChangeEvents. |
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ChangeType
Class for all constants which are used to indicate change types. |
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ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojava.bio.alignment | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
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ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojava.bio.annodb | |
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CommitFailure
|
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ParserException
Exception thrown when an error occurs in document parsing. |
Classes in org.biojava.utils used by org.biojava.bio.dist | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeEvent
Event which encapsulates a change in any mutable BioJava object. |
|
ChangeForwarder
This is a ChangeListener that is designed to adapt events of one type from one source to events of another type emitted by another source. |
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ChangeListener
Interface for objects which listen to ChangeEvents. |
|
ChangeSupport
A utility class to provide management for informing ChangeListeners of ChangeEvents. |
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ChangeType
Class for all constants which are used to indicate change types. |
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ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
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Unchangeable
This is a utility implementation of Changeable that doesn't fire any events or keep references to any listeners. |
Classes in org.biojava.utils used by org.biojava.bio.dp | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeForwarder
This is a ChangeListener that is designed to adapt events of one type from one source to events of another type emitted by another source. |
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ChangeSupport
A utility class to provide management for informing ChangeListeners of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
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ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
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Unchangeable
This is a utility implementation of Changeable that doesn't fire any events or keep references to any listeners. |
Classes in org.biojava.utils used by org.biojava.bio.gui.sequence | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeEvent
Event which encapsulates a change in any mutable BioJava object. |
|
ChangeForwarder
This is a ChangeListener that is designed to adapt events of one type from one source to events of another type emitted by another source. |
|
ChangeListener
Interface for objects which listen to ChangeEvents. |
|
ChangeSupport
A utility class to provide management for informing ChangeListeners of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojava.bio.molbio | |
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Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ThreadPool
ThreadPool specifies basic thread-pooling
operations such that third-party implementations may be used
without requiring changes to BioJava. |
Classes in org.biojava.utils used by org.biojava.bio.program.das | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
ActivityListener
Interface for object which monitor long-running activities. |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeForwarder
This is a ChangeListener that is designed to adapt events of one type from one source to events of another type emitted by another source. |
|
ChangeListener
Interface for objects which listen to ChangeEvents. |
|
ChangeSupport
A utility class to provide management for informing ChangeListeners of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
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ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
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Unchangeable
This is a utility implementation of Changeable that doesn't fire any events or keep references to any listeners. |
Classes in org.biojava.utils used by org.biojava.bio.program.gff | |
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ParserException
Exception thrown when an error occurs in document parsing. |
Classes in org.biojava.utils used by org.biojava.bio.program.gff3 | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
|
ParserException
Exception thrown when an error occurs in document parsing. |
Classes in org.biojava.utils used by org.biojava.bio.program.hmmer | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojava.bio.program.homologene | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojava.bio.program.indexdb | |
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CommitFailure
|
|
ParserException
Exception thrown when an error occurs in document parsing. |
Classes in org.biojava.utils used by org.biojava.bio.program.phred | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ParseErrorEvent
Event which signals a bad line when parsing a record. |
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ParseErrorListener
Listener for a ParseErrorEvent. |
|
ParseErrorSource
Source for a ParseErrorEvent. |
Classes in org.biojava.utils used by org.biojava.bio.program.tagvalue | |
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ParserException
Exception thrown when an error occurs in document parsing. |
Classes in org.biojava.utils used by org.biojava.bio.program.unigene | |
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Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
|
ParserException
Exception thrown when an error occurs in document parsing. |
Classes in org.biojava.utils used by org.biojava.bio.program.xff | |
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ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojava.bio.proteomics | |
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ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojava.bio.search | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeForwarder
This is a ChangeListener that is designed to adapt events of one type from one source to events of another type emitted by another source. |
|
ChangeSupport
A utility class to provide management for informing ChangeListeners of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
TriState
Class that represents the tristate values possible in a logical operation: true, false and indeterminate. |
Classes in org.biojava.utils used by org.biojava.bio.seq | |
---|---|
AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeForwarder
This is a ChangeListener that is designed to adapt events of one type from one source to events of another type emitted by another source. |
|
ChangeSupport
A utility class to provide management for informing ChangeListeners of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
|
Unchangeable
This is a utility implementation of Changeable that doesn't fire any events or keep references to any listeners. |
Classes in org.biojava.utils used by org.biojava.bio.seq.db | |
---|---|
AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeEvent
Event which encapsulates a change in any mutable BioJava object. |
|
ChangeForwarder
This is a ChangeListener that is designed to adapt events of one type from one source to events of another type emitted by another source. |
|
ChangeListener
Interface for objects which listen to ChangeEvents. |
|
ChangeSupport
A utility class to provide management for informing ChangeListeners of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojava.bio.seq.db.biofetch | |
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Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
|
Unchangeable
This is a utility implementation of Changeable that doesn't fire any events or keep references to any listeners. |
Classes in org.biojava.utils used by org.biojava.bio.seq.db.biosql | |
---|---|
AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojava.bio.seq.db.flat | |
---|---|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
|
Unchangeable
This is a utility implementation of Changeable that doesn't fire any events or keep references to any listeners. |
Classes in org.biojava.utils used by org.biojava.bio.seq.distributed | |
---|---|
AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeSupport
A utility class to provide management for informing ChangeListeners of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojava.bio.seq.homol | |
---|---|
AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
|
Unchangeable
This is a utility implementation of Changeable that doesn't fire any events or keep references to any listeners. |
Classes in org.biojava.utils used by org.biojava.bio.seq.impl | |
---|---|
AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeForwarder
This is a ChangeListener that is designed to adapt events of one type from one source to events of another type emitted by another source. |
|
ChangeListener
Interface for objects which listen to ChangeEvents. |
|
ChangeSupport
A utility class to provide management for informing ChangeListeners of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
|
Unchangeable
This is a utility implementation of Changeable that doesn't fire any events or keep references to any listeners. |
Classes in org.biojava.utils used by org.biojava.bio.seq.io | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
|
ParseErrorEvent
Event which signals a bad line when parsing a record. |
|
ParseErrorListener
Listener for a ParseErrorEvent. |
|
ParseErrorSource
Source for a ParseErrorEvent. |
|
Unchangeable
This is a utility implementation of Changeable that doesn't fire any events or keep references to any listeners. |
Classes in org.biojava.utils used by org.biojava.bio.seq.projection | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeEvent
Event which encapsulates a change in any mutable BioJava object. |
|
ChangeListener
Interface for objects which listen to ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojava.bio.symbol | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeEvent
Event which encapsulates a change in any mutable BioJava object. |
|
ChangeForwarder
This is a ChangeListener that is designed to adapt events of one type from one source to events of another type emitted by another source. |
|
ChangeListener
Interface for objects which listen to ChangeEvents. |
|
ChangeSupport
A utility class to provide management for informing ChangeListeners of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
|
Unchangeable
This is a utility implementation of Changeable that doesn't fire any events or keep references to any listeners. |
Classes in org.biojava.utils used by org.biojava.bio.taxa | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeSupport
A utility class to provide management for informing ChangeListeners of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojava.ontology | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeSupport
A utility class to provide management for informing ChangeListeners of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
|
Unchangeable
This is a utility implementation of Changeable that doesn't fire any events or keep references to any listeners. |
Classes in org.biojava.utils used by org.biojava.utils | |
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Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeAdapter
This is a ChangeListener that ignores everything. |
|
ChangeEvent
Event which encapsulates a change in any mutable BioJava object. |
|
ChangeForwarder
This is a ChangeListener that is designed to adapt events of one type from one source to events of another type emitted by another source. |
|
ChangeHub
Interface implemented by ChangeHubs, i.e. |
|
ChangeListener
Interface for objects which listen to ChangeEvents. |
|
ChangeSupport
A utility class to provide management for informing ChangeListeners of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
|
Commitable
Implementations of Commitable support atomic changes
from one known state to another via commit/rollback semantics. |
|
CommitFailure
|
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IndexedChangeHub.ListenerMemento
|
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ListTools.Mapper
Maps one object to another. |
|
ListTools.SeriesList
A list that represents a series of values. |
|
MergingSet
|
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ParseErrorEvent
Event which signals a bad line when parsing a record. |
|
ParseErrorListener
Listener for a ParseErrorEvent. |
|
ProcessTimeoutException
Exception which is thrown if a child process managed by ProcessTools
exceeds a specified time limit. |
|
ThreadPool
ThreadPool specifies basic thread-pooling
operations such that third-party implementations may be used
without requiring changes to BioJava. |
|
TriState
Class that represents the tristate values possible in a logical operation: true, false and indeterminate. |
Classes in org.biojava.utils used by org.biojava.utils.cache | |
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ChangeType
Class for all constants which are used to indicate change types. |
Classes in org.biojava.utils used by org.biojava.utils.process | |
---|---|
ThreadPool
ThreadPool specifies basic thread-pooling
operations such that third-party implementations may be used
without requiring changes to BioJava. |
Classes in org.biojava.utils used by org.biojavax | |
---|---|
AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
|
Unchangeable
This is a utility implementation of Changeable that doesn't fire any events or keep references to any listeners. |
Classes in org.biojava.utils used by org.biojavax.bio | |
---|---|
AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojavax.bio.db | |
---|---|
AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojavax.bio.db.biosql | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojavax.bio.db.ncbi | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
Classes in org.biojava.utils used by org.biojavax.bio.seq | |
---|---|
AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeListener
Interface for objects which listen to ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
|
Unchangeable
This is a utility implementation of Changeable that doesn't fire any events or keep references to any listeners. |
Classes in org.biojava.utils used by org.biojavax.bio.taxa | |
---|---|
AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojavax.ga | |
---|---|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojavax.ga.functions | |
---|---|
AbstractChangeable
Useful base-class for objects implementing Changeable |
|
Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
|
ChangeListener
Interface for objects which listen to ChangeEvents. |
|
ChangeType
Class for all constants which are used to indicate change types. |
|
ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojavax.ga.impl | |
---|---|
AbstractChangeable
Useful base-class for objects implementing Changeable |
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Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
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ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
Classes in org.biojava.utils used by org.biojavax.ontology | |
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AbstractChangeable
Useful base-class for objects implementing Changeable |
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Changeable
This is a flag interface that defines the common add/remove listener methods for classes and interfaces that wish to indicate that they are sources of ChangeEvents. |
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ChangeType
Class for all constants which are used to indicate change types. |
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ChangeVetoException
Exception which is thrown when a ChangeListener does not wish a change to take place. |
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