org.biojavax.bio.db.biosql
Class BioSQLFeatureFilter.BySourceTermName
java.lang.Object
org.biojavax.bio.db.biosql.BioSQLFeatureFilter.HibernateFeatureFilter
org.biojavax.bio.db.biosql.BioSQLFeatureFilter.BySourceTermName
- All Implemented Interfaces:
- Serializable, FeatureFilter, BioSQLFeatureFilter
- Enclosing interface:
- BioSQLFeatureFilter
public static final class BioSQLFeatureFilter.BySourceTermName
- extends BioSQLFeatureFilter.HibernateFeatureFilter
Construct one of these to filter features by source (name only - parent ontology
is ignored).
- Since:
- 1.5
- Author:
- Richard Holland
- See Also:
- Serialized Form
Nested classes/interfaces inherited from interface org.biojavax.bio.db.biosql.BioSQLFeatureFilter |
BioSQLFeatureFilter.And, BioSQLFeatureFilter.ByName, BioSQLFeatureFilter.ByNote, BioSQLFeatureFilter.ByNoteTermOnly, BioSQLFeatureFilter.ByRank, BioSQLFeatureFilter.BySequenceName, BioSQLFeatureFilter.BySourceTerm, BioSQLFeatureFilter.BySourceTermName, BioSQLFeatureFilter.ByStrand, BioSQLFeatureFilter.ByTypeTerm, BioSQLFeatureFilter.ByTypeTermName, BioSQLFeatureFilter.ContainedByRichLocation, BioSQLFeatureFilter.HibernateFeatureFilter, BioSQLFeatureFilter.Not, BioSQLFeatureFilter.Or, BioSQLFeatureFilter.OverlapsRichLocation, BioSQLFeatureFilter.Tools |
Nested classes/interfaces inherited from interface org.biojava.bio.seq.FeatureFilter |
FeatureFilter.AnnotationContains, FeatureFilter.ByAncestor, FeatureFilter.ByAnnotation, FeatureFilter.ByAnnotationType, FeatureFilter.ByChild, FeatureFilter.ByClass, FeatureFilter.ByComponentName, FeatureFilter.ByDescendant, FeatureFilter.ByFeature, FeatureFilter.ByPairwiseScore, FeatureFilter.ByParent, FeatureFilter.BySource, FeatureFilter.ByType, FeatureFilter.ContainedByLocation, FeatureFilter.FrameFilter, FeatureFilter.HasAnnotation, FeatureFilter.OnlyChildren, FeatureFilter.OnlyDescendants, FeatureFilter.OverlapsLocation, FeatureFilter.ShadowContainedByLocation, FeatureFilter.ShadowOverlapsLocation, FeatureFilter.StrandFilter |
BioSQLFeatureFilter.BySourceTermName
public BioSQLFeatureFilter.BySourceTermName(String sourceTermName)
- Create a BySourceTerm filter that filters in all features with sourceTerm fields
having name equal to sourceTermName.
- Parameters:
sourceTermName
- the name of the Term to match sourceTerm fields against
getSourceTermName
public String getSourceTermName()
accept
public boolean accept(Feature f)
- Returns true if the feature has a matching source property.
- Parameters:
f
- the Feature to evaluate
- Returns:
- true if this feature is to be selected in, or false if it is to be ignored
asCriterion
public Object asCriterion()
- Description copied from interface:
BioSQLFeatureFilter
- This method returns a Hibernate Criterion object that can be used to
query the database.
- Returns:
- a Hibernate Criterion object representing this filter.
criterionAliasMap
public Map criterionAliasMap()
- Description copied from interface:
BioSQLFeatureFilter
- Returns a map of property names (keys) to aliases (values), if the criterion
returned by asCriterion() uses aliases at all. If not, then it must at least
return the empty map else you'll get NullPointerExceptions thrown elsewhere.
- Specified by:
criterionAliasMap
in interface BioSQLFeatureFilter
- Overrides:
criterionAliasMap
in class BioSQLFeatureFilter.HibernateFeatureFilter
- Returns:
- Map a map of property names to aliases used in the criterion.
equals
public boolean equals(Object o)
- Overrides:
equals
in class Object
hashCode
public int hashCode()
- Overrides:
hashCode
in class Object
toString
public String toString()
- Overrides:
toString
in class Object