class Bio::Alignment::FactoryTemplate::StdinInFileOut

Template class for alignment application factory. The program needs: input: stdin or file, format = fasta format output: file (parser should be specified by DEFAULT_PARSER)

Private Instance Methods

_option_output_stdout() click to toggle source

generates options specifying output to stdout. returns an array of string

# File lib/bio/alignment.rb, line 2448
def _option_output_stdout
  raise 'output is always a file'
end