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Packages that use ProjectionContext | |
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org.biojava.bio.seq.impl | Standard in-memory implementations of Sequence and
Feature . |
org.biojava.bio.seq.projection | Code for projecting Feature objects and systematically altering their properties. |
Uses of ProjectionContext in org.biojava.bio.seq.impl |
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Classes in org.biojava.bio.seq.impl that implement ProjectionContext | |
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class |
SimpleGappedSequence.GappedContext
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static class |
SubSequence.SubProjectedFeatureContext
TargetContext that implements the mapping between the parent sequence and this sub-sequence. |
Uses of ProjectionContext in org.biojava.bio.seq.projection |
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Classes in org.biojava.bio.seq.projection that implement ProjectionContext | |
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class |
ReparentContext
A good base class to implement ProjectionContext from. |
class |
TranslateFlipContext
A ProjectionContext that translates and optionaly flips features. |
Methods in org.biojava.bio.seq.projection that return ProjectionContext | |
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ProjectionContext |
ProjectedFeatureHolder.getContext()
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ProjectionContext |
Projection.getProjectionContext()
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ProjectionContext |
ProjectedFeature.getProjectionContext()
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Methods in org.biojava.bio.seq.projection with parameters of type ProjectionContext | |
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Feature |
ProjectionEngine.projectFeature(Feature f,
ProjectionContext ctx)
Return a projection of Feature f into the system
defined by a given ProjectionContext. |
Feature.Template |
ProjectionEngine.revertTemplate(Feature.Template templ,
ProjectionContext ctxt)
Revert a template so that it can be used on the original feature-space. |
Feature.Template |
ProjectionEngine.TemplateProjector.revertTemplate(ProjectionContext ctxt,
Feature.Template projTempl)
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Constructors in org.biojava.bio.seq.projection with parameters of type ProjectionContext | |
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ProjectedFeature(Feature f,
ProjectionContext ctx)
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ProjectedFeatureHolder(ProjectionContext context)
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