org.biojava.bio.structure.align.helper
Class JointFragments

java.lang.Object
  extended by org.biojava.bio.structure.align.helper.JointFragments

public class JointFragments
extends Object

A utility class that defines which set of atoms are considered to be on equivalent positions.


Constructor Summary
JointFragments()
           
 
Method Summary
 void add(int p1, int p2, int start, int end)
           
 List<int[]> getIdxlist()
           
 double getRms()
           
 void setIdxlist(List<int[]> idxs)
           
 void setRms(double rms)
           
 String toString()
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
 

Constructor Detail

JointFragments

public JointFragments()
Method Detail

setIdxlist

public void setIdxlist(List<int[]> idxs)

getRms

public double getRms()

setRms

public void setRms(double rms)

getIdxlist

public List<int[]> getIdxlist()

add

public void add(int p1,
                int p2,
                int start,
                int end)

toString

public String toString()
Overrides:
toString in class Object