Bio::TreeIO::tabtree(3)

NAME
Bio::TreeIO::tabtree - A simple output format which displays a tree as an ASCII drawing

SYNOPSIS
  use Bio::TreeIO;
  my $in = Bio::TreeIO->new(-file => 'input', -format => 'newick');
  my $out = Bio::TreeIO->new(-file => '>output', -format => 'tabtree');

  while( my $tree = $in->next_tree ) {
      $out->write_tree($tree);
  }

DESCRIPTION
This is a made up format just for outputting trees as an ASCII drawing.

FEEDBACK

  Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

  Support
Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

  Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  http://bugzilla.open-bio.org/

AUTHOR - Jason Stajich
Email jason@bioperl.org

APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

  new
 Title   : new
 Usage   : my $obj = Bio::TreeIO::tabtree->new();
 Function: Builds a new Bio::TreeIO::tabtree object
 Returns : Bio::TreeIO::tabtree
 Args    :

  write_tree
 Title   : write_tree
 Usage   : $treeio->write_tree($tree);
 Function: Write a tree out to data stream in newick/phylip format
 Returns : none
 Args    : Bio::Tree::TreeI object

  next_tree
 Title   : next_tree
 Usage   :
 Function: Sorry not possible with this format
 Returns : none
 Args    : none