Uses of Package
org.biojava.bio.dp.twohead

Packages that use org.biojava.bio.dp.twohead
org.biojava.bio.dp HMM and Dynamic Programming Algorithms. 
org.biojava.bio.dp.twohead   
 

Classes in org.biojava.bio.dp.twohead used by org.biojava.bio.dp
CellCalculatorFactoryMaker
          The interface for all functions that can calculate the 'scores' array for a given cell.
 

Classes in org.biojava.bio.dp.twohead used by org.biojava.bio.dp.twohead
AbstractMatrixPairDPCursor
           
Cell
           A single cell in the DP matrix.
CellCalculator
           The interface for all functions that can calculate the 'scores' array for a given cell.
CellCalculatorFactory
           
CellCalculatorFactoryMaker
          The interface for all functions that can calculate the 'scores' array for a given cell.
EmissionCache
          Cache for columns of emission probabilities in pair-wise alignment algorithms.
PairDPCursor
          A cursor over a DP matrix.
PairDPMatrix
          Storage structure for intermediate values from a pairwise dynamic programming run.