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Packages that use RealizingFeatureHolder | |
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org.biojava.bio.program.phred | Parser for Phred output |
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects. |
org.biojava.bio.seq.impl | Standard in-memory implementations of Sequence and
Feature . |
Uses of RealizingFeatureHolder in org.biojava.bio.program.phred |
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Classes in org.biojava.bio.program.phred that implement RealizingFeatureHolder | |
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class |
PhredSequence
PhredSequence is an extension of SimpleSequence that implements Qualitative to hold Phred quality scores. |
Uses of RealizingFeatureHolder in org.biojava.bio.seq |
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Classes in org.biojava.bio.seq that implement RealizingFeatureHolder | |
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class |
CircularView
A circular view onto another Sequence object. |
class |
NewSimpleAssembly
A Sequence which is assembled from other sequences contained in a set of ComponentFeature objects. |
class |
SimpleAssembly
A Sequence which is assembled from other sequences contained in a set of ComponentFeature objects. |
Uses of RealizingFeatureHolder in org.biojava.bio.seq.impl |
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Classes in org.biojava.bio.seq.impl that implement RealizingFeatureHolder | |
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class |
RevCompSequence
A reverse complement view onto Sequence interface. |
class |
SimpleFeature
A no-frills implementation of a feature. |
class |
SimpleFramedFeature
Title: SimpleFramedFeature. |
class |
SimpleHomologyFeature
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class |
SimpleRemoteFeature
A no-frills implementation of a remote feature. |
class |
SimpleRestrictionSite
SimpleRestrictionSite represents the recognition site
of a restriction enzyme. |
class |
SimpleSequence
A basic implementation of the Sequence interface. |
class |
SimpleSimilarityPairFeature
SimpleSimilarityPairFeature represents a similarity
between a query sequence and a subject sequence as produced by a
search program. |
class |
SimpleStrandedFeature
A no-frills implementation of StrandedFeature. |
class |
ViewSequence
A view onto another Sequence object. |
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