class Bio::Tcoffee
Bio::Tcoffee is a wrapper class to execute t-coffee.
Please refer documents in bio/apple/tcoffee.rb for references.
Constants
- DEFAULT_PARSER
CLUSTAL W result data (*.aln file) parser class.
- DEFAULT_PROGRAM
default program name
Private Instance Methods
_option_input_file(fn)
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generates options specifying input filename. returns an array of string
# File lib/bio/appl/tcoffee.rb, line 38 def _option_input_file(fn) [ '-infile', fn ] end
_option_output_dndfile(fn)
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generates options specifying output filename. returns an array of string
# File lib/bio/appl/tcoffee.rb, line 50 def _option_output_dndfile(fn) [ '-newtree', fn ] end
_option_output_file(fn)
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generates options specifying output filename. returns an array of string
# File lib/bio/appl/tcoffee.rb, line 44 def _option_output_file(fn) [ '-outfile', fn ] end