|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use FeatureRealizer | |
---|---|
org.biojava.bio.seq | Classes and interfaces for defining biological sequences and informatics objects. |
org.biojava.bio.seq.impl | Standard in-memory implementations of Sequence and
Feature . |
Uses of FeatureRealizer in org.biojava.bio.seq |
---|
Classes in org.biojava.bio.seq that implement FeatureRealizer | |
---|---|
class |
SimpleFeatureRealizer
FeatureRealizer which uses a lookup table to map template classes to implementations. |
Methods in org.biojava.bio.seq with parameters of type FeatureRealizer | |
---|---|
static ViewSequence |
SequenceTools.view(Sequence seq,
FeatureRealizer fr)
Creates a new Sequence with the data of the old but with a different FeatureRealizer that will be applied to new Features. |
Constructors in org.biojava.bio.seq with parameters of type FeatureRealizer | |
---|---|
CircularView(Sequence seq,
FeatureRealizer fr)
|
|
SimpleFeatureRealizer(FeatureRealizer fallBack)
|
Uses of FeatureRealizer in org.biojava.bio.seq.impl |
---|
Fields in org.biojava.bio.seq.impl declared as FeatureRealizer | |
---|---|
static FeatureRealizer |
FeatureImpl.DEFAULT
Default implementation of FeatureRealizer, which wraps simple implementations of Feature and StrandedFeature. |
Methods in org.biojava.bio.seq.impl that return FeatureRealizer | |
---|---|
FeatureRealizer |
SimpleSequenceFactory.getFeatureRealizer()
Returns the FeatureRealizer set by "setFeatureRealizer". |
Methods in org.biojava.bio.seq.impl with parameters of type FeatureRealizer | |
---|---|
void |
SimpleSequenceFactory.setFeatureRealizer(FeatureRealizer fr)
Set the FeatureRealizer used by new sequences created by this factory. |
Constructors in org.biojava.bio.seq.impl with parameters of type FeatureRealizer | |
---|---|
SimpleSequence(SymbolList sym,
String urn,
String name,
Annotation annotation,
FeatureRealizer realizer)
Create a SimpleSequence using a specified FeatureRealizer. |
|
ViewSequence(Sequence seq,
FeatureRealizer fr)
Construct a view onto a sequence, using a specific FeatureRealizer. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |