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Packages that use SoftMaskedAlphabet | |
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org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
Uses of SoftMaskedAlphabet in org.biojava.bio.symbol |
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Methods in org.biojava.bio.symbol that return SoftMaskedAlphabet | |
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static SoftMaskedAlphabet |
SoftMaskedAlphabet.getInstance(FiniteAlphabet alphaToMask)
Generates a soft masked Alphabet where lowercase tokens are assumed to be soft masked. |
static SoftMaskedAlphabet |
SoftMaskedAlphabet.getInstance(FiniteAlphabet alphaToMask,
SoftMaskedAlphabet.MaskingDetector maskingDetector)
Creates a compound alphabet that is a hybrid of the alphabet that is to be soft masked and a binary alphabet that indicates if any Symbol is soft masked or not. |
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