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Packages that use NexusObject | |
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org.biojavax.bio.phylo.io.nexus | Classes to support the I/O of Nexus files. |
Uses of NexusObject in org.biojavax.bio.phylo.io.nexus |
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Subinterfaces of NexusObject in org.biojavax.bio.phylo.io.nexus | |
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interface |
NexusBlock
Represents a Nexus block. |
Classes in org.biojavax.bio.phylo.io.nexus that implement NexusObject | |
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class |
CharactersBlock
Represents Nexus characters blocks. |
class |
DataBlock
Represents Nexus data blocks. |
class |
DistancesBlock
Represents Nexus distances blocks. |
static class |
NexusBlock.Abstract
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class |
NexusComment
Represents a Nexus comment, possibly nested. |
class |
TaxaBlock
Represents Nexus taxa blocks. |
class |
TreesBlock
Represents Nexus trees blocks. |
Methods in org.biojavax.bio.phylo.io.nexus with parameters of type NexusObject | |
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void |
NexusFile.addObject(NexusObject object)
Appends an object to the end of the file. |
boolean |
NexusFile.containsObject(NexusObject object)
Checks to see if we contain an object. |
void |
NexusFile.insertObject(NexusObject object,
int pos)
Inserts an object at the given position. |
void |
NexusFile.removeObject(NexusObject object)
Removes an object from the file. |
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