org.biojava.bio.program.ssbind
Class AlignmentStAXHandler

java.lang.Object
  extended by org.biojava.utils.stax.StAXContentHandlerBase
      extended by org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler
          extended by org.biojava.bio.program.ssbind.AlignmentStAXHandler
All Implemented Interfaces:
StAXContentHandler

public class AlignmentStAXHandler
extends SeqSimilarityStAXHandler

AlignmentStAXHandler handles the BlastLikeAlignment element of BioJava BlastLike XML.

Since:
1.3
Author:
Keith James

Field Summary
static StAXHandlerFactory ALIGNMENT_HANDLER_FACTORY
           
 
Fields inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler
ssContext
 
Method Summary
 
Methods inherited from class org.biojava.bio.program.ssbind.SeqSimilarityStAXHandler
addHandler, endElement, handleEndElement, handleStartElement, startElement
 
Methods inherited from class org.biojava.utils.stax.StAXContentHandlerBase
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

ALIGNMENT_HANDLER_FACTORY

public static final StAXHandlerFactory ALIGNMENT_HANDLER_FACTORY