org.biojava.bio.structure.align.pairwise
Class AligNPE

java.lang.Object
  extended by org.biojava.bio.structure.align.pairwise.AligNPE

public class AligNPE
extends Object


Constructor Summary
AligNPE()
           
 
Method Summary
static Alignable align_NPE(Matrix sim, StrucAligParameters params)
          Align w/o penalizing endpags.
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

AligNPE

public AligNPE()
Method Detail

align_NPE

public static Alignable align_NPE(Matrix sim,
                                  StrucAligParameters params)
Align w/o penalizing endpags. Return alignment and score

Parameters:
sim - the similarity matrix
params - the structure alignment parameters to be used
Returns:
an Alignable