performance
Class SmithWatermanExample
java.lang.Object
performance.SmithWatermanExample
public class SmithWatermanExample
- extends Object
- Since:
- 1.7
- Author:
- Andreas Dräger (draeger) , Andreas Prlic
Method Summary |
static void |
main(String[] args)
This method computes a pairwise local alignment between two given sequences
and prints the result on the standard output stream. |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
SmithWatermanExample
public SmithWatermanExample()
main
public static void main(String[] args)
- This method computes a pairwise local alignment between two given sequences
and prints the result on the standard output stream. The sequences must be
genbank files and the substitution matrix must be defined for the same
alphabet than both sequences.
- Parameters:
args
- query sequence file (genbank), subject sequence file (genbank),
substitution matrix file