org.biojava.bio.seq.io.agave
Class AGAVEClassificationHandler

java.lang.Object
  extended by org.biojava.bio.seq.io.agave.StAXContentHandlerBase
      extended by org.biojava.bio.seq.io.agave.StAXFeatureHandler
          extended by org.biojava.bio.seq.io.agave.AGAVEClassificationHandler
All Implemented Interfaces:
AGAVEIdAliasCallbackItf, StAXContentHandler

public class AGAVEClassificationHandler
extends StAXFeatureHandler
implements AGAVEIdAliasCallbackItf

Author:
Hanning Ni Doubletwist Inc

Field Summary
static StAXHandlerFactory AGAVE_CLASSIFICATION_HANDLER_FACTORY
           
 
Fields inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler
annot, callbackStack, endLoc, featureListener, featureTemplate, myLocalName, stackLevel, startLoc, staxenv, subFeatures
 
Method Summary
 void addIdAlias(AGAVEIdAlias id)
           
 void endElementHandler(String nsURI, String localName, String qName, StAXContentHandler handler)
          Element specific exit handler Subclass to do anything useful.
 void startElementHandler(String nsURI, String localName, String qName, Attributes attrs)
          Element-specific handler.
 
Methods inherited from class org.biojava.bio.seq.io.agave.StAXFeatureHandler
addFeatureToSequence, addHandler, createTemplate, endElement, getFeatureListener, getHandlerStackIterator, getLevel, pop, push, realizeSubFeatures, setFeatureListener, setHandlerCharacteristics, setProperty, startElement
 
Methods inherited from class org.biojava.bio.seq.io.agave.StAXContentHandlerBase
characters, endPrefixMapping, endTree, ignorableWhitespace, processingInstruction, setDocumentLocator, skippedEntity, startPrefixMapping, startTree
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

AGAVE_CLASSIFICATION_HANDLER_FACTORY

public static final StAXHandlerFactory AGAVE_CLASSIFICATION_HANDLER_FACTORY
Method Detail

startElementHandler

public void startElementHandler(String nsURI,
                                String localName,
                                String qName,
                                Attributes attrs)
                         throws SAXException
Description copied from class: StAXFeatureHandler
Element-specific handler. Subclass this to do something useful!

Overrides:
startElementHandler in class StAXFeatureHandler
Throws:
SAXException

addIdAlias

public void addIdAlias(AGAVEIdAlias id)
Specified by:
addIdAlias in interface AGAVEIdAliasCallbackItf

endElementHandler

public void endElementHandler(String nsURI,
                              String localName,
                              String qName,
                              StAXContentHandler handler)
                       throws SAXException
Description copied from class: StAXFeatureHandler
Element specific exit handler Subclass to do anything useful.

Overrides:
endElementHandler in class StAXFeatureHandler
Throws:
SAXException