Copyright |
Copyright (C) 2004 GOTO Naohisa <ng@bioruby.org> |
License |
The Ruby License |
$Id: report.rb,v 1.10 2007/04/05 23:35:40 trevor Exp $
NCBI Spidey result parser. Currently, output of default (-p 0 option) or -p 1 option are supported.
The mRNA sequence is regarded as a query, and the enomic sequence is regarded as a target (subject, hit).
Wheelan, S.J., et al., Spidey: a tool for mRNA-to-genomic alignments, Genome Research, 11, 1952--1957, 2001. www.genome.org/cgi/content/abstract/11/11/1952