
Amino acid sequence
   Maximum Likelihood method with molecular clock, version 3.7a

 5 species,  13  sites
Jones-Taylor-Thornton model of amino acid change


Name            Sequences
----            ---------

Alpha        AACGTGGCCA AAT
Beta         ..G..C.... ..C
Gamma        C.TT.C.T.. C.A
Delta        GGTA.TT.GG CC.
Epsilon      GGGA.CT.GG CCC






              +-----Epsilon   
  +-----------4  
  !           +-----Delta     
--3  
  !  +---------------Gamma     
  +--2  
     !         +-----Alpha     
     +---------1  
               +-----Beta      


Ln Likelihood =  -140.47565

 Ancestor      Node      Node Height     Length
 --------      ----      ---- ------     ------
 root            3      
   3             4          0.20782      0.20782
   4          Epsilon       0.30000      0.09218
   4          Delta         0.30000      0.09218
   3             2          0.04143      0.04143
   2          Gamma         0.30000      0.25857
   2             1          0.19471      0.15328
   1          Alpha         0.30000      0.10529
   1          Beta          0.30000      0.10529




Probable sequences at interior nodes:

  node       Reconstructed sequence (caps if > 0.95)

    3        gataTCgCCa Cac
    4        GGtATCTCGG CCc
 Epsilon     GGGATCTCGG CCC
 Delta       GGTATTTCGG CCT
    2        aAtaTCGCCA CAc
 Gamma       CATTTCGTCA CAA
    1        AAgGTCGCCA AAc
 Alpha       AACGTGGCCA AAT
 Beta        AAGGTCGCCA AAC

