
Protein parsimony algorithm, version 3.7a

 5 species,  10  sites


Name          Sequences
----          ---------

Alpha        ABCDEFGHIK 
Beta         ..--...... 
Gamma        ?...S..*?? 
Delta        CIK....... 
Epsilon      DIK....... 




     3 trees in all found


  +-----Gamma     
  |  
  |           +-----Epsilon   
  |     +-----3  
  1-----2     +-----Delta     
  |     |  
  |     +-----Beta      
  |  
  +-----Alpha     

  remember: this is an unrooted tree!



requires a total of     16.000


steps in each site:
         0   1   2   3   4   5   6   7   8   9
     r-----------------------------------------
    0|       3   1   5   3   2   0   0   2   0
   10|   0                                    

From    To     Any Steps?    State at upper node
                             ( . means same as in the node below it on tree)


         1                ?N?D?FG?IK 
  1   Gamma        yes    ?BCD.FG*?? 
  1      2         yes    ?N.DEFGHIK 
  2      3         yes    .IK....... 
  3   Epsilon     maybe   D......... 
  3   Delta        yes    C......... 
  2   Beta         yes    AB--...... 



              +-----Epsilon   
        +-----3  
  +-----2     +-----Delta     
  |     |  
  |     +-----Gamma     
  |  
  1-----Beta      
  |  
  +-----Alpha     

  remember: this is an unrooted tree!



requires a total of     16.000


steps in each site:
         0   1   2   3   4   5   6   7   8   9
     r-----------------------------------------
    0|       3   1   5   3   2   0   0   2   0
   10|   0                                    

From    To     Any Steps?    State at upper node
                             ( . means same as in the node below it on tree)


         1                ?N??EFGHIK 
  1      2         yes    ?N.DEFGHIK 
  2      3         yes    .IK....... 
  3   Epsilon     maybe   D......... 
  3   Delta        yes    C......... 
  2   Gamma        yes    ?BC.S..*?? 
  1   Beta         yes    AB--EFGHIK 



        +-----Epsilon   
  +-----3  
  |     +-----Delta     
  |  
  |     +-----Gamma     
  1-----2  
  |     +-----Beta      
  |  
  +-----Alpha     

  remember: this is an unrooted tree!



requires a total of     16.000


steps in each site:
         0   1   2   3   4   5   6   7   8   9
     r-----------------------------------------
    0|       3   1   5   3   2   0   0   2   0
   10|   0                                    

From    To     Any Steps?    State at upper node
                             ( . means same as in the node below it on tree)


         1                ???DEFGHIK 
  1      3         yes    ?IKDEFGHIK 
  3   Epsilon     maybe   D......... 
  3   Delta        yes    C......... 
  1      2         yes    ?N.DEFGHIK 
  2   Gamma        yes    ?BC.S..*?? 
  2   Beta         yes    AB--...... 


