
Nucleic acid sequence Maximum Likelihood method, version 3.7a

 5 species,  13  sites

Name            Sequences
----            ---------

Alpha        AACGTGGCCA AAT
Beta         ..G..C.... ..C
Gamma        C.TT.C.T.. C.A
Delta        GGTA.TT.GG CC.
Epsilon      GGGA.CT.GG CCC



Empirical Base Frequencies:

   A       0.24615
   C       0.29231
   G       0.24615
  T(U)     0.21538

Transition/transversion ratio =   2.000000


                                                   +Epsilon   
     +---------------------------------------------1  
  +--2                                             +--------Delta     
  |  |  
  |  +Beta      
  |  
  3------------------------------Gamma     
  |  
  +-----Alpha     


remember: this is an unrooted tree!

Ln Likelihood =   -72.25449

 Between        And            Length      Approx. Confidence Limits
 -------        ---            ------      ------- ---------- ------

     3          Alpha             0.18670     (     zero,     0.53645)
     3             2              0.10687     (     zero,     0.42581)
     2             1              1.51296     (     zero,     3.31131) **
     1          Epsilon           0.00006     (     zero,     0.34299)
     1          Delta             0.28136     (     zero,     0.62653) **
     2          Beta              0.00006     (     zero,     0.32907)
     3          Gamma             1.01861     (     zero,     2.33843) **

     *  = significantly positive, P < 0.05
     ** = significantly positive, P < 0.01


Probable sequences at interior nodes:

  node       Reconstructed sequence (caps if > 0.95)

    3        AAcGTCGCCA AAc
    2        AAGGTCGCCA AAC
    1        GGGATCTCGG CCC
 Epsilon     GGGATCTCGG CCC
 Delta       GGTATTTCGG CCT
 Beta        AAGGTCGCCA AAC
 Gamma       CATTTCGTCA CAA
 Alpha       AACGTGGCCA AAT

