AFNI(1)

NAME

AFNI - Analysis of Functional NeuroImages

SYNOPSIS

afni [header file]

DESCRIPTION
AFNI (Analysis of Functional NeuroImages) is a tool for viewing and analyzing 3D brain images, usually from functional magnetic resonance imaging scans. The AFNI distribution consists of hundreds of programs, and is far too extensive to document as a man page. For quick usage info, type afni -help Full postscript documentation and READMEs can be found in /usr/local/share/doc/afni. For more information visit the AFNI WEB site at http://afni.nimh.nih.gov

FILES
 .afnirc, .cshrc, .tcshrc, .profile, .bashrc

ENVIRONMENT
Users of this installation must have /usr/local/bin in their PATH. AFNI_PLUGINPATH must include /usr/local/lib/afni so that AFNI can find plugins, and /usr/local/share/afni so that AFNI can find startup images and atlases. For csh-compatible shells: setenv AFNI_PLUGINPATH /usr/local/lib/afni:/usr/local/share/afni For sh-compatible shells:
AFNI_PLUGINPATH=/usr/local/lib/afni:/usr/local/share/afni
export AFNI_PLUGINPATH
If you plan to use the atlas files, set AFNI_GLOBAL_SESSION to /usr/local/share/afni. Note that these values are particular to this installation. These files may be located elsewhere on other machines. There are many environment variables to control AFNI behavior. See the full AFNI documentation, especially README.environment, for details.

SEE ALSO
BrainVoyager, Caret, DTIQuery, FreeSurfer, FSL, SPM, SurfRelax

AUTHOR
RW Cox, PhD, et al.
National Institutes of Health