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Packages that use org.biojavax.bio.phylo.io.nexus | |
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org.biojavax.bio.phylo | Classes to support phlylogeny objects. |
org.biojavax.bio.phylo.io.nexus | Classes to support the I/O of Nexus files. |
Classes in org.biojavax.bio.phylo.io.nexus used by org.biojavax.bio.phylo | |
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CharactersBlock
Represents Nexus characters blocks. |
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TaxaBlock
Represents Nexus taxa blocks. |
Classes in org.biojavax.bio.phylo.io.nexus used by org.biojavax.bio.phylo.io.nexus | |
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CharactersBlock
Represents Nexus characters blocks. |
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CharactersBlockBuilder
Builds Nexus characters blocks. |
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CharactersBlockListener
Listens to events that represent Nexus characters blocks. |
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CharactersBlockParser
Parses Nexus characters blocks. |
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DataBlockListener
Listens to events that represent Nexus data blocks. |
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DistancesBlockListener
Listens to events that represent Nexus distances blocks. |
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NexusBlock
Represents a Nexus block. |
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NexusBlock.Abstract
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NexusBlockBuilder
Builds a Nexus block from listening to events. |
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NexusBlockBuilder.Abstract
This abstract version knows how to build and add comments. |
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NexusBlockListener
Listens to events from NexusBlockParser objects to create objects. |
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NexusBlockParser
Parses Nexus blocks. |
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NexusBlockParser.Abstract
All block parsers should derive from this abstract parser. |
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NexusComment
Represents a Nexus comment, possibly nested. |
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NexusFile
Represents Nexus files. |
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NexusFileListener
Listens to events fired by the Nexus parser. |
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NexusFileListener.Abstract
Example abstract implementation which all others should extend. |
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NexusObject
Represents general info about nexus objects. |
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TaxaBlockListener
Listens to events that represent Nexus taxa blocks. |
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TreesBlock.NewickTreeString
A simple representation of a Newick tree as a single string. |
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TreesBlockListener
Listens to events that represent Nexus trees blocks. |
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