Uses of Interface
org.biojava.bio.seq.homol.SimilarityPairFeature

Packages that use SimilarityPairFeature
org.biojava.bio.seq.homol The classes and interfaces for defining sequence similarity and honology. 
org.biojava.bio.seq.impl Standard in-memory implementations of Sequence and Feature
 

Uses of SimilarityPairFeature in org.biojava.bio.seq.homol
 

Fields in org.biojava.bio.seq.homol declared as SimilarityPairFeature
 SimilarityPairFeature SimilarityPairFeature.Template.sibling
          sibling SimilarityPairFeature field.
 

Methods in org.biojava.bio.seq.homol that return SimilarityPairFeature
 SimilarityPairFeature SimilarityPairFeature.getSibling()
          getSibling returns the sibling Feature, query for subject and vice versa.
 

Methods in org.biojava.bio.seq.homol with parameters of type SimilarityPairFeature
 void SimilarityPairFeature.setSibling(SimilarityPairFeature sibling)
          setSibling sets the sibling feature of the pair.
 

Uses of SimilarityPairFeature in org.biojava.bio.seq.impl
 

Classes in org.biojava.bio.seq.impl that implement SimilarityPairFeature
 class SimpleSimilarityPairFeature
          SimpleSimilarityPairFeature represents a similarity between a query sequence and a subject sequence as produced by a search program.
 

Methods in org.biojava.bio.seq.impl that return SimilarityPairFeature
 SimilarityPairFeature SimpleSimilarityPairFeature.getSibling()
          getSibling returns the sibling feature of the pair.
 

Methods in org.biojava.bio.seq.impl with parameters of type SimilarityPairFeature
 void SimpleSimilarityPairFeature.setSibling(SimilarityPairFeature sibling)