|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use BasisSymbol | |
---|---|
org.biojava.bio.dp | HMM and Dynamic Programming Algorithms. |
org.biojava.bio.program.hmmer | Tools for working with profile Hidden Markov Models from the HMMer package. |
org.biojava.bio.symbol | Representation of the Symbols that make up a sequence, and locations within them. |
Uses of BasisSymbol in org.biojava.bio.dp |
---|
Subinterfaces of BasisSymbol in org.biojava.bio.dp | |
---|---|
interface |
DotState
A Dot state. |
interface |
EmissionState
A state in a markov process that has an emission spectrum. |
interface |
ModelInState
A state that contains an entire sub-model. |
interface |
State
A state in a markov process. |
Classes in org.biojava.bio.dp that implement BasisSymbol | |
---|---|
class |
MagicalState
Start/end state for HMMs. |
class |
SimpleDotState
A Dot state that you can make and use. |
class |
SimpleEmissionState
|
class |
SimpleModelInState
|
Uses of BasisSymbol in org.biojava.bio.program.hmmer |
---|
Classes in org.biojava.bio.program.hmmer that implement BasisSymbol | |
---|---|
class |
ProfileEmissionState
A state in a HMMer model. |
Uses of BasisSymbol in org.biojava.bio.symbol |
---|
Subinterfaces of BasisSymbol in org.biojava.bio.symbol | |
---|---|
interface |
AtomicSymbol
A symbol that is not ambiguous. |
Classes in org.biojava.bio.symbol that implement BasisSymbol | |
---|---|
static class |
DoubleAlphabet.DoubleRange
A range of double values. |
static class |
DoubleAlphabet.DoubleSymbol
A single double value. |
class |
FundamentalAtomicSymbol
An atomic symbol consisting only of itself. |
static class |
IntegerAlphabet.IntegerSymbol
A single int value. |
class |
SimpleAtomicSymbol
A basic implementation of AtomicSymbol. |
Methods in org.biojava.bio.symbol with parameters of type BasisSymbol | |
---|---|
boolean |
SoftMaskedAlphabet.isMasked(BasisSymbol s)
Determines if a Symbol is masked. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |