## map file format

Main Table of Contents | VERSION 4.6
GROMACS homepage | Sat 19 Jan 2013

### Description

This file maps matrix data to RGB values which is used by the do_dssp program.

The format of this file is as follow: first line number of elements in the colormap. Then for each line: The first character is a code for the secondary structure type. Then comes a string for use in the legend of the plot and then the R (red) G (green) and B (blue) values.

In this case the colors are (in order of appearance): white, red, black, cyan, yellow, blue, magenta, orange.

    8
    ~  	Coil		1.0	  1.0	  1.0
    E 	B-Sheet		1.0	  0.0	  0.0
    B 	B-Bridge	0.0	  0.0	  0.0
    S 	Bend		0.0	  0.8	  0.8
    T 	Turn		1.0	  1.0	  0.0
    H 	A-Helix		0.0	  0.0	  1.0
    G 	3-Helix		1.0	  0.0	  1.0
    I 	5-Helix		1.0	  0.6	  0.0

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