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do2to3.py
setup.cfg
setup.py
Bio/DocSQL.py
Bio/File.py
Bio/HotRand.py
Bio/Index.py
Bio/LogisticRegression.py
Bio/MarkovModel.py
Bio/MaxEntropy.py
Bio/NaiveBayes.py
Bio/ParserSupport.py
Bio/Search.py
Bio/Seq.py
Bio/SeqFeature.py
Bio/SeqRecord.py
Bio/__init__.py
Bio/_py3k.py
Bio/bgzf.py
Bio/cpairwise2module.c
Bio/kNN.py
Bio/pairwise2.py
Bio/trie.c
Bio/trie.h
Bio/triefind.py
Bio/triemodule.c
Bio/Affy/CelFile.py
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Bio/Align/Applications/__init__.py
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Bio/AlignIO/EmbossIO.py
Bio/AlignIO/FastaIO.py
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Bio/Blast/Applications.py
Bio/Blast/NCBIStandalone.py
Bio/Blast/NCBIWWW.py
Bio/Blast/NCBIXML.py
Bio/Blast/ParseBlastTable.py
Bio/Blast/Record.py
Bio/Blast/__init__.py
Bio/CAPS/__init__.py
Bio/Cluster/__init__.py
Bio/Cluster/cluster.c
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Bio/Cluster/clustermodule.c
Bio/Compass/__init__.py
Bio/Crystal/__init__.py
Bio/Data/CodonTable.py
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Tests/test_PDB.py
Tests/test_PDB_KDTree.py
Tests/test_ParserSupport.py
Tests/test_Pathway.py
Tests/test_Phd.py
Tests/test_Phylo.py
Tests/test_PhyloXML.py
Tests/test_Phylo_depend.py
Tests/test_PopGen_DFDist.py
Tests/test_PopGen_FDist.py
Tests/test_PopGen_FDist_nodepend.py
Tests/test_PopGen_GenePop.py
Tests/test_PopGen_GenePop_EasyController.py
Tests/test_PopGen_GenePop_nodepend.py
Tests/test_PopGen_SimCoal.py
Tests/test_PopGen_SimCoal_nodepend.py
Tests/test_Prank_tool.py
Tests/test_Probcons_tool.py
Tests/test_ProtParam.py
Tests/test_Restriction.py
Tests/test_SCOP_Astral.py
Tests/test_SCOP_Cla.py
Tests/test_SCOP_Des.py
Tests/test_SCOP_Dom.py
Tests/test_SCOP_Hie.py
Tests/test_SCOP_Raf.py
Tests/test_SCOP_Residues.py
Tests/test_SCOP_Scop.py
Tests/test_SCOP_online.py
Tests/test_SVDSuperimposer.py
Tests/test_SeqIO.py
Tests/test_SeqIO_AbiIO.py
Tests/test_SeqIO_FastaIO.py
Tests/test_SeqIO_QualityIO.py
Tests/test_SeqIO_SeqXML.py
Tests/test_SeqIO_convert.py
Tests/test_SeqIO_features.py
Tests/test_SeqIO_index.py
Tests/test_SeqIO_online.py
Tests/test_SeqIO_write.py
Tests/test_SeqRecord.py
Tests/test_SeqUtils.py
Tests/test_Seq_objs.py
Tests/test_SffIO.py
Tests/test_SubsMat.py
Tests/test_SwissProt.py
Tests/test_TCoffee_tool.py
Tests/test_TogoWS.py
Tests/test_Tutorial.py
Tests/test_UniGene.py
Tests/test_Uniprot.py
Tests/test_Wise.py
Tests/test_align.py
Tests/test_bgzf.py
Tests/test_geo.py
Tests/test_kNN.py
Tests/test_lowess.py
Tests/test_pairwise2.py
Tests/test_phyml_tool.py
Tests/test_prodoc.py
Tests/test_prosite1.py
Tests/test_prosite2.py
Tests/test_psw.py
Tests/test_raxml_tool.py
Tests/test_seq.py
Tests/test_translate.py
Tests/test_trie.py
Tests/Abi/310.ab1
Tests/Abi/3100.ab1
Tests/Abi/3730.ab1
Tests/Abi/empty.ab1
Tests/Abi/fake.ab1
Tests/Abi/test_data
Tests/Ace/consed_sample.ace
Tests/Ace/contig1.ace
Tests/Ace/seq.cap.ace
Tests/BioSQL/biosqldb-mysql.sql
Tests/BioSQL/biosqldb-pg.sql
Tests/BioSQL/biosqldb-sqlite.sql
Tests/Blast/README.txt
Tests/Blast/bt001.txt
Tests/Blast/bt002.txt
Tests/Blast/bt003.txt
Tests/Blast/bt004.txt
Tests/Blast/bt005.txt
Tests/Blast/bt006.txt
Tests/Blast/bt007.txt
Tests/Blast/bt009.txt
Tests/Blast/bt010.txt
Tests/Blast/bt011.txt
Tests/Blast/bt012.txt
Tests/Blast/bt013.txt
Tests/Blast/bt014.txt
Tests/Blast/bt015.txt
Tests/Blast/bt016.txt
Tests/Blast/bt017.txt
Tests/Blast/bt018.txt
Tests/Blast/bt019.txt
Tests/Blast/bt020.txt
Tests/Blast/bt021.txt
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Tests/Blast/bt023.txt
Tests/Blast/bt024.txt
Tests/Blast/bt025.txt
Tests/Blast/bt026.txt
Tests/Blast/bt027.txt
Tests/Blast/bt028.txt
Tests/Blast/bt029.txt
Tests/Blast/bt030.txt
Tests/Blast/bt031.txt
Tests/Blast/bt032.txt
Tests/Blast/bt033.txt
Tests/Blast/bt034.txt
Tests/Blast/bt035.txt
Tests/Blast/bt036.txt
Tests/Blast/bt037.txt
Tests/Blast/bt038.txt
Tests/Blast/bt039.txt
Tests/Blast/bt040.txt
Tests/Blast/bt041.txt
Tests/Blast/bt042.txt
Tests/Blast/bt043.txt
Tests/Blast/bt044.txt
Tests/Blast/bt045.txt
Tests/Blast/bt046.txt
Tests/Blast/bt047.txt
Tests/Blast/bt048.txt
Tests/Blast/bt049.txt
Tests/Blast/bt050.txt
Tests/Blast/bt051.txt
Tests/Blast/bt052.txt
Tests/Blast/bt053.txt
Tests/Blast/bt054.txt
Tests/Blast/bt055.txt
Tests/Blast/bt056.txt
Tests/Blast/bt057.txt
Tests/Blast/bt058.txt
Tests/Blast/bt059.txt
Tests/Blast/bt060.txt
Tests/Blast/bt061.txt
Tests/Blast/bt062.txt
Tests/Blast/bt063.txt
Tests/Blast/bt064.txt
Tests/Blast/bt065.txt
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Tests/Blast/bt069.txt
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Tests/Blast/bt071.txt
Tests/Blast/bt072.txt
Tests/Blast/bt073.txt
Tests/Blast/bt074.txt
Tests/Blast/bt075.txt
Tests/Blast/bt076.txt
Tests/Blast/bt077.txt
Tests/Blast/bt078.txt
Tests/Blast/bt079.txt
Tests/Blast/bt080.txt
Tests/Blast/bt081.txt
Tests/Blast/bt082.txt
Tests/Blast/bt083.txt
Tests/Blast/bt084.txt
Tests/Blast/bt085.txt
Tests/Blast/bt086.txt
Tests/Blast/bt087.txt
Tests/Blast/bt088.txt
Tests/Blast/bt089.txt
Tests/Blast/bt090.txt
Tests/Blast/bt091.txt
Tests/Blast/bt092.txt
Tests/Blast/bt093.txt
Tests/Blast/bt094.txt
Tests/Blast/bt095.txt
Tests/Blast/bt096.txt
Tests/Blast/xbt001.xml
Tests/Blast/xbt002.xml
Tests/Blast/xbt003.xml
Tests/Blast/xbt004.xml
Tests/Blast/xbt005.xml
Tests/Blast/xbt006.xml
Tests/Blast/xbt007.xml
Tests/Blast/xbt008.xml
Tests/Blast/xbt009.xml
Tests/Blast/xbt010.xml
Tests/Blast/xbt011.xml
Tests/Clustalw/cw02.aln
Tests/Clustalw/hedgehog.aln
Tests/Clustalw/odd_consensus.aln
Tests/Clustalw/opuntia.aln
Tests/Clustalw/promals3d.aln
Tests/Clustalw/protein.aln
Tests/CodonUsage/HighlyExpressedGenes.txt
Tests/Compass/comtest1
Tests/Compass/comtest2
Tests/EMBL/A04195.imgt
Tests/EMBL/AAA03323.embl
Tests/EMBL/AE017046.embl
Tests/EMBL/DD231055_edited.embl
Tests/EMBL/Human_contigs.embl
Tests/EMBL/SC10H5.embl
Tests/EMBL/TRBG361.embl
Tests/EMBL/U87107.embl
Tests/EMBL/epo_prt_selection.embl
Tests/EMBL/location_wrap.embl
Tests/Emboss/NirK.primer3
Tests/Emboss/NirK_full.primer3
Tests/Emboss/alignret.txt
Tests/Emboss/bac_find.primer3
Tests/Emboss/bac_find.psearch
Tests/Emboss/cds_forward.primer3
Tests/Emboss/cds_reverse.primer3
Tests/Emboss/internal_oligo.primer3
Tests/Emboss/matcher_pair.txt
Tests/Emboss/matcher_simple.txt
Tests/Emboss/needle.txt
Tests/Emboss/needle_asis.txt
Tests/Emboss/short.primer3
Tests/Emboss/water.txt
Tests/Emboss/water2.txt
Tests/Entrez/egquery1.xml
Tests/Entrez/egquery2.xml
Tests/Entrez/einfo1.xml
Tests/Entrez/einfo2.xml
Tests/Entrez/einfo3.xml
Tests/Entrez/einfo4.xml
Tests/Entrez/elink1.xml
Tests/Entrez/elink2.xml
Tests/Entrez/elink3.xml
Tests/Entrez/elink4.xml
Tests/Entrez/elink5.xml
Tests/Entrez/elink6.xml
Tests/Entrez/elink7.xml
Tests/Entrez/elink8.xml
Tests/Entrez/elink9.xml
Tests/Entrez/epost1.xml
Tests/Entrez/epost2.xml
Tests/Entrez/epost3.xml
Tests/Entrez/esearch1.xml
Tests/Entrez/esearch2.xml
Tests/Entrez/esearch3.xml
Tests/Entrez/esearch4.xml
Tests/Entrez/esearch5.xml
Tests/Entrez/esearch6.xml
Tests/Entrez/esearch7.xml
Tests/Entrez/esearch8.xml
Tests/Entrez/espell.xml
Tests/Entrez/esummary1.xml
Tests/Entrez/esummary2.xml
Tests/Entrez/esummary3.xml
Tests/Entrez/esummary4.xml
Tests/Entrez/esummary5.xml
Tests/Entrez/esummary6.xml
Tests/Entrez/esummary7.xml
Tests/Entrez/esummary8.xml
Tests/Entrez/journals.xml
Tests/Entrez/ncbi_mim.xml
Tests/Entrez/nucleotide1.xml
Tests/Entrez/nucleotide2.xml
Tests/Entrez/protein.xml
Tests/Entrez/pubmed1.xml
Tests/Entrez/pubmed2.xml
Tests/Entrez/pubmed3.html
Tests/Entrez/taxonomy.xml
Tests/Enzymes/lactate.txt
Tests/Enzymes/lipoprotein.txt
Tests/Enzymes/proline.txt
Tests/Enzymes/valine.txt
Tests/ExtendedPhylip/primates.phyx
Tests/FSSP/1cnv.fssp
Tests/Fasta/README
Tests/Fasta/aster.pro
Tests/Fasta/centaurea.nu
Tests/Fasta/dups.fasta
Tests/Fasta/elderberry.nu
Tests/Fasta/f001
Tests/Fasta/f002
Tests/Fasta/f003
Tests/Fasta/fa01
Tests/Fasta/lavender.nu
Tests/Fasta/loveliesbleeding.pro
Tests/Fasta/lupine.nu
Tests/Fasta/output001.m10
Tests/Fasta/output002.m10
Tests/Fasta/output003.m10
Tests/Fasta/output004.m10
Tests/Fasta/output005.m10
Tests/Fasta/output006.m10
Tests/Fasta/output007.m10
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Tests/Fasta/phlox.nu
Tests/Fasta/rose.pro
Tests/Fasta/rosemary.pro
Tests/Fasta/sweetpea.nu
Tests/Fasta/wisteria.nu
Tests/GFF/NC_001422.gbk
Tests/GFF/NC_001802.fna
Tests/GFF/NC_001802lc.fna
Tests/GFF/NC_001802x.fna
Tests/GFF/multi.fna
Tests/GenBank/NC_000932.faa
Tests/GenBank/NC_000932.gb
Tests/GenBank/NC_000932.gb.bgz
Tests/GenBank/NC_005816.faa
Tests/GenBank/NC_005816.ffn
Tests/GenBank/NC_005816.fna
Tests/GenBank/NC_005816.gb
Tests/GenBank/NC_005816.tsv
Tests/GenBank/NT_019265.gb
Tests/GenBank/arab1.gb
Tests/GenBank/blank_seq.gb
Tests/GenBank/cor6_6.gb
Tests/GenBank/cor6_6.gb.bgz
Tests/GenBank/dbsource_wrap.gb
Tests/GenBank/extra_keywords.gb
Tests/GenBank/gbvrl1_start.seq
Tests/GenBank/iro.gb
Tests/GenBank/noref.gb
Tests/GenBank/one_of.gb
Tests/GenBank/origin_line.gb
Tests/GenBank/pBAD30.gb
Tests/GenBank/pri1.gb
Tests/GenBank/protein_refseq.gb
Tests/GenBank/protein_refseq2.gb
Tests/Geo/GSE16.txt
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Tests/Geo/GSM691.txt
Tests/Geo/GSM700.txt
Tests/Geo/GSM804.txt
Tests/Geo/soft_ex_affy.txt
Tests/Geo/soft_ex_affy_chp.txt
Tests/Geo/soft_ex_dual.txt
Tests/Geo/soft_ex_family.txt
Tests/Geo/soft_ex_platform.txt
Tests/Geo/soft_ex_series.txt
Tests/Graphics/README
Tests/IntelliGenetics/TAT_mase_nuc.txt
Tests/IntelliGenetics/VIF_mase-pro.txt
Tests/IntelliGenetics/vpu_nucaligned.txt
Tests/KEGG/compound.irregular
Tests/KEGG/compound.sample
Tests/KEGG/enzyme.irregular
Tests/KEGG/enzyme.sample
Tests/KEGG/map00950.rea
Tests/MEME/mast.dna.oops.txt
Tests/MEME/mast.protein.oops.txt
Tests/MEME/mast.protein.tcm.txt
Tests/MEME/meme.dna.oops.txt
Tests/MEME/meme.protein.oops.txt
Tests/MEME/meme.protein.tcm.txt
Tests/Medline/pubmed_result1.txt
Tests/Medline/pubmed_result2.txt
Tests/MetaTool/Meta3.out
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Tests/MetaTool/Meta6.out
Tests/MetaTool/Meta7.out
Tests/MetaTool/Meta8.out
Tests/MetaTool/meta.out
Tests/MetaTool/meta2.out
Tests/MetaTool/meta9.out
Tests/Motif/Arnt.sites
Tests/Motif/SRF.pfm
Tests/Motif/alignace.out
Tests/Motif/mast.dna.oops.txt
Tests/Motif/mast.protein.oops.txt
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Tests/Motif/meme.dna.oops.txt
Tests/Motif/meme.out
Tests/Motif/meme.protein.oops.txt
Tests/Motif/meme.protein.tcm.txt
Tests/NBRF/B_nuc.pir
Tests/NBRF/Cw_prot.pir
Tests/NBRF/DMA_nuc.pir
Tests/NBRF/DMB_prot.pir
Tests/NBRF/clustalw.pir
Tests/NeuralNetwork/enolase.fasta
Tests/NeuralNetwork/repeat.fasta
Tests/Nexus/codonposset.nex
Tests/Nexus/int_node_labels.nwk
Tests/Nexus/test_Nexus_input.nex
Tests/PAML/gen_results.py
Tests/PAML/Alignments/aa_alignment.phylip
Tests/PAML/Alignments/alignment.phylip
Tests/PAML/Alignments/lysinYangSwanson2002.nuc
Tests/PAML/Control_files/README.txt
Tests/PAML/Control_files/bad1.ctl
Tests/PAML/Control_files/bad2.ctl
Tests/PAML/Control_files/bad3.ctl
Tests/PAML/Control_files/baseml.ctl
Tests/PAML/Control_files/species.tree
Tests/PAML/Control_files/yn00.ctl
Tests/PAML/Control_files/baseml/SE.ctl
Tests/PAML/Control_files/baseml/alpha1rho1.ctl
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Tests/PAML/Results/codeml/freeratio/freeratio-4_5.out
Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene012-4_1.out
Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene012-4_3.out
Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene012-4_4.out
Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene012-4_4c.out
Tests/PAML/Results/codeml/ngene2_mgene02/ngene2_mgene012-4_5.out
Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_3.out
Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4.out
Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_4c.out
Tests/PAML/Results/codeml/ngene2_mgene1/ngene2_mgene1-4_5.out
Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_1.out
Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_3.out
Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4.out
Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_4c.out
Tests/PAML/Results/codeml/ngene2_mgene34/ngene2_mgene34-4_5.out
Tests/PAML/Results/codeml/pairwise/pairwise-4_1.out
Tests/PAML/Results/codeml/pairwise/pairwise-4_3.out
Tests/PAML/Results/codeml/pairwise/pairwise-4_4.out
Tests/PAML/Results/codeml/pairwise/pairwise-4_4c.out
Tests/PAML/Results/codeml/pairwise/pairwise-4_5.out
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Tests/PAML/Results/yn00/yn00-4_3.out
Tests/PAML/Results/yn00/yn00-4_4.out
Tests/PAML/Results/yn00/yn00-4_4c.out
Tests/PAML/Results/yn00/yn00-4_5.out
Tests/PAML/Trees/bad.tree
Tests/PAML/Trees/lysin.trees
Tests/PAML/Trees/species.tree
Tests/PDB/1A8O.cif
Tests/PDB/1A8O.pdb
Tests/PDB/1LCD.cif
Tests/PDB/1MOT.pdb
Tests/PDB/2BEG.pdb
Tests/PDB/a_structure.pdb
Tests/PDB/ions.pdb
Tests/Phd/phd1
Tests/Phd/phd2
Tests/Phd/phd_454
Tests/Phd/phd_solexa
Tests/Phylip/hennigian.phy
Tests/Phylip/horses.phy
Tests/Phylip/horses.tree
Tests/Phylip/interlaced.phy
Tests/Phylip/interlaced2.phy
Tests/Phylip/random.phy
Tests/Phylip/reference_dna.phy
Tests/Phylip/reference_dna2.phy
Tests/Phylip/sequential.phy
Tests/Phylip/sequential2.phy
Tests/PhyloXML/apaf.xml
Tests/PhyloXML/bcl_2.xml
Tests/PhyloXML/example.xml
Tests/PhyloXML/made_up.xml
Tests/PhyloXML/o_tol_332_d_dollo.xml
Tests/PhyloXML/phyloxml_examples.xml
Tests/PopGen/README
Tests/PopGen/big.gen
Tests/PopGen/c2line.gen
Tests/PopGen/c2space.gen
Tests/PopGen/c3line.gen
Tests/PopGen/c3space.gen
Tests/PopGen/data_dfst_outfile
Tests/PopGen/data_fst_outfile
Tests/PopGen/dfdist1
Tests/PopGen/dout.cpl
Tests/PopGen/dout.dat
Tests/PopGen/fdist1
Tests/PopGen/haplo.gen
Tests/PopGen/haplo2.gen
Tests/PopGen/haplo3.gen
Tests/PopGen/out.cpl
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Tests/PopGen/simple.par
Tests/Prosite/ps00107.txt
Tests/Prosite/ps00159.txt
Tests/Prosite/ps00165.txt
Tests/Prosite/ps00432.txt
Tests/Prosite/ps00488.txt
Tests/Prosite/ps00546.txt
Tests/Prosite/Doc/pdoc00100.txt
Tests/Prosite/Doc/pdoc00113.txt
Tests/Prosite/Doc/pdoc00144.txt
Tests/Prosite/Doc/pdoc00149.txt
Tests/Prosite/Doc/pdoc00340.txt
Tests/Prosite/Doc/pdoc00424.txt
Tests/Prosite/Doc/pdoc00472.txt
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Tests/Prosite/Doc/pdoc00787.txt
Tests/Prosite/Doc/pdoc00933.txt
Tests/Prosite/Doc/prosite.excerpt.doc
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Tests/Quality/error_double_qual.fastq
Tests/Quality/error_double_seq.fastq
Tests/Quality/error_long_qual.fastq
Tests/Quality/error_no_qual.fastq
Tests/Quality/error_qual_del.fastq
Tests/Quality/error_qual_escape.fastq
Tests/Quality/error_qual_null.fastq
Tests/Quality/error_qual_space.fastq
Tests/Quality/error_qual_tab.fastq
Tests/Quality/error_qual_unit_sep.fastq
Tests/Quality/error_qual_vtab.fastq
Tests/Quality/error_short_qual.fastq
Tests/Quality/error_spaces.fastq
Tests/Quality/error_tabs.fastq
Tests/Quality/error_trunc_at_plus.fastq
Tests/Quality/error_trunc_at_qual.fastq
Tests/Quality/error_trunc_at_seq.fastq
Tests/Quality/error_trunc_in_plus.fastq
Tests/Quality/error_trunc_in_qual.fastq
Tests/Quality/error_trunc_in_seq.fastq
Tests/Quality/error_trunc_in_title.fastq
Tests/Quality/example.fasta
Tests/Quality/example.fastq
Tests/Quality/example.fastq.bgz
Tests/Quality/example.fastq.gz
Tests/Quality/example.qual
Tests/Quality/illumina_faked.fastq
Tests/Quality/illumina_full_range_as_illumina.fastq
Tests/Quality/illumina_full_range_as_sanger.fastq
Tests/Quality/illumina_full_range_as_solexa.fastq
Tests/Quality/illumina_full_range_original_illumina.fastq
Tests/Quality/longreads_as_illumina.fastq
Tests/Quality/longreads_as_sanger.fastq
Tests/Quality/longreads_as_solexa.fastq
Tests/Quality/longreads_original_sanger.fastq
Tests/Quality/misc_dna_as_illumina.fastq
Tests/Quality/misc_dna_as_sanger.fastq
Tests/Quality/misc_dna_as_solexa.fastq
Tests/Quality/misc_dna_original_sanger.fastq
Tests/Quality/misc_rna_as_illumina.fastq
Tests/Quality/misc_rna_as_sanger.fastq
Tests/Quality/misc_rna_as_solexa.fastq
Tests/Quality/misc_rna_original_sanger.fastq
Tests/Quality/sanger_93.fastq
Tests/Quality/sanger_faked.fastq
Tests/Quality/sanger_full_range_as_illumina.fastq
Tests/Quality/sanger_full_range_as_sanger.fastq
Tests/Quality/sanger_full_range_as_solexa.fastq
Tests/Quality/sanger_full_range_original_sanger.fastq
Tests/Quality/solexa_example.fastq
Tests/Quality/solexa_faked.fastq
Tests/Quality/solexa_full_range_as_illumina.fastq
Tests/Quality/solexa_full_range_as_sanger.fastq
Tests/Quality/solexa_full_range_as_solexa.fastq
Tests/Quality/solexa_full_range_original_solexa.fastq
Tests/Quality/tricky.fastq
Tests/Quality/wrapping_as_illumina.fastq
Tests/Quality/wrapping_as_sanger.fastq
Tests/Quality/wrapping_as_solexa.fastq
Tests/Quality/wrapping_original_sanger.fastq
Tests/Rebase/bamii.htm
Tests/Rebase/bamii.txt
Tests/Rebase/cac81.htm
Tests/Rebase/cac81.txt
Tests/Rebase/crei.htm
Tests/Rebase/crei.txt
Tests/Rebase/foki.htm
Tests/Rebase/foki.txt
Tests/Rebase/pvuii.htm
Tests/Rebase/pvuii.txt
Tests/Rebase/taqi.htm
Tests/Rebase/taqi.txt
Tests/Registry/EDD_RAT.dat
Tests/Registry/bt001
Tests/Registry/seqs.fasta
Tests/Roche/E3MFGYR02_alt_index_at_end.sff
Tests/Roche/E3MFGYR02_alt_index_at_start.sff
Tests/Roche/E3MFGYR02_alt_index_in_middle.sff
Tests/Roche/E3MFGYR02_index_at_start.sff
Tests/Roche/E3MFGYR02_index_in_middle.sff
Tests/Roche/E3MFGYR02_no_manifest.sff
Tests/Roche/E3MFGYR02_random_10_reads.fasta
Tests/Roche/E3MFGYR02_random_10_reads.qual
Tests/Roche/E3MFGYR02_random_10_reads.sff
Tests/Roche/E3MFGYR02_random_10_reads_no_trim.fasta
Tests/Roche/E3MFGYR02_random_10_reads_no_trim.qual
Tests/Roche/README.txt
Tests/Roche/greek.sff
Tests/Roche/paired.sff
Tests/Roche/triple_sff.idx
Tests/SCOP/dir.cla.scop.txt_test
Tests/SCOP/dir.des.scop.txt_test
Tests/SCOP/dir.hie.scop.txt_test
Tests/SCOP/raftest.txt
Tests/SCOP/testDom.txt
Tests/SCOP/scopseq-test/astral-scopdom-seqres-all-test.fa
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-10-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-100-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-20-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-25-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-30-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-35-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-40-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-50-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-70-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-90-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-bib-95-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0,7-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+0-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e+1-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-0,3-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1,3-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-1-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-10-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-15-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2,3-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-2-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-20-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-25-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-3-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-4-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-5-test.id
Tests/SCOP/scopseq-test/astral-scopdom-seqres-sel-gs-e100m-e-50-test.id
Tests/Saf/saf1.txt
Tests/SamBam/ex1.bam
Tests/SamBam/ex1.fa
Tests/SamBam/ex1.sam
Tests/SamBam/ex1_header.bam
Tests/SamBam/ex1_header.sam
Tests/SamBam/ex1_refresh.bam
Tests/SamBam/readme.txt
Tests/SeqXML/corrupt_example1.xml
Tests/SeqXML/corrupt_example2.xml
Tests/SeqXML/dna_example.xml
Tests/SeqXML/global_species_example.xml
Tests/SeqXML/protein_example.xml
Tests/SeqXML/rna_example.xml
Tests/Stockholm/funny.sth
Tests/Stockholm/simple.sth
Tests/SubsMat/aaDistrib.txt
Tests/SubsMat/acc_rep_mat.pik
Tests/SubsMat/protein_count.txt
Tests/SubsMat/protein_freq.txt
Tests/SubsMat/redAADistrib.txt
Tests/SubsMat/redAltAADistrib.txt
Tests/SwissProt/Q13639.txt
Tests/SwissProt/Q13639.xml
Tests/SwissProt/README
Tests/SwissProt/keywlist.txt
Tests/SwissProt/keywlist2.txt
Tests/SwissProt/multi_ex.fasta
Tests/SwissProt/multi_ex.gff
Tests/SwissProt/multi_ex.list
Tests/SwissProt/multi_ex.rdf
Tests/SwissProt/multi_ex.txt
Tests/SwissProt/multi_ex.xml
Tests/SwissProt/sp001
Tests/SwissProt/sp002
Tests/SwissProt/sp003
Tests/SwissProt/sp004
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Tests/SwissProt/sp014
Tests/SwissProt/sp015
Tests/SwissProt/sp016
Tests/SwissProt/uni001
Tests/SwissProt/uni002
Tests/UniGene/Eca.1.2425.data
Tests/UniGene/Hs.2.data
Tests/UniGene/Mdm_partial.data
Tests/Wise/human_114_g01_exons.fna_01
Tests/Wise/human_114_g02_exons.fna_01
Tests/output/test_AlignIO
Tests/output/test_AlignIO_FastaIO
Tests/output/test_BioSQL_SeqIO
Tests/output/test_ClustalOmega_tool
Tests/output/test_Clustalw
Tests/output/test_Clustalw_tool
Tests/output/test_CodonTable
Tests/output/test_CodonUsage
Tests/output/test_DocSQL
Tests/output/test_FSSP
Tests/output/test_File
Tests/output/test_GAQueens
Tests/output/test_GFF
Tests/output/test_GFF2
Tests/output/test_GenBank
Tests/output/test_HMMCasino
Tests/output/test_IsoelectricPoint
Tests/output/test_KDTree
Tests/output/test_KEGG
Tests/output/test_Location
Tests/output/test_MEME
Tests/output/test_NCBI_qblast
Tests/output/test_NNExclusiveOr
Tests/output/test_PDB
Tests/output/test_ParserSupport
Tests/output/test_ProtParam
Tests/output/test_SVDSuperimposer
Tests/output/test_SeqIO
Tests/output/test_SeqUtils
Tests/output/test_SubsMat
Tests/output/test_align
Tests/output/test_geo
Tests/output/test_property_manager
Tests/output/test_seq
Tests/output/test_translate
biopython.egg-info/PKG-INFO
biopython.egg-info/SOURCES.txt
biopython.egg-info/dependency_links.txt
biopython.egg-info/top_level.txt