module Bio::PDB::ResidueFinder
methods to access residues
XXX#each_chain must be defined.
Bio::PDB::ResidueFinder is included by Bio::PDB::PDB, Bio::PDB::Model, and Bio::PDB::Chain.
Public Instance Methods
each_residue() { |residue| ... }
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iterates over each residue
# File lib/bio/db/pdb/utils.rb, line 299 def each_residue(&x) #:yields: residue self.each_chain { |chain| chain.each(&x) } end
find_residue() { |residue| ... }
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returns an array containing all residues for which given block is not
false
(similar to Enumerable#find_all).
# File lib/bio/db/pdb/utils.rb, line 290 def find_residue array = [] self.each_residue do |residue| array.push(residue) if yield(residue) end return array end
residues()
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returns all residues
# File lib/bio/db/pdb/utils.rb, line 304 def residues array = [] self.each_chain { |chain| array.concat(chain.residues) } return array end