class Bio::TRANSFAC::FACTOR
Public Class Methods
# File lib/bio/db/transfac.rb, line 199 def initialize(entry) super(entry) end
Public Instance Methods
BS Bound sites (site accession no.; site ID; quality: N; biological BS species)
# File lib/bio/db/transfac.rb, line 284 def bs field_fetch('BS') end
CL Classification (class accession no.; class identifier; decimal CL classification number.)
# File lib/bio/db/transfac.rb, line 225 def cl field_fetch('CL') end
CN Cell specificity (negative)
# File lib/bio/db/transfac.rb, line 262 def cn field_fetch('CN') end
CP Cell specificity (positive)
# File lib/bio/db/transfac.rb, line 257 def cp field_fetch('CP') end
DR Cross-references to other databases (>=0 per entry)
# File lib/bio/db/transfac.rb, line 214 def dr field_fetch('DR') end
FA Factor name
# File lib/bio/db/transfac.rb, line 204 def fa field_fetch('FA') end
FF Functional features
# File lib/bio/db/transfac.rb, line 267 def ff field_fetch('FF') end
FT Feature table (1st position last position feature)
# File lib/bio/db/transfac.rb, line 247 def ft field_fetch('FT') end
HO Homologs (suggested)
# File lib/bio/db/transfac.rb, line 219 def ho field_fetch('HO') end
IN Interacting factors (factor accession no.; factor name; IN biological species.)
# File lib/bio/db/transfac.rb, line 273 def in field_fetch('IN') end
MX Matrix (matrix accession no.; matrix identifier)
# File lib/bio/db/transfac.rb, line 278 def mx field_fetch('MX') end
SC Sequence comment, i. e. source of the protein sequence
# File lib/bio/db/transfac.rb, line 242 def sc field_fetch('SC') end
SF Structural features
# File lib/bio/db/transfac.rb, line 252 def sf field_fetch('SF') end
SQ Sequence
# File lib/bio/db/transfac.rb, line 237 def sq field_fetch('SQ') end
SY Synonyms
# File lib/bio/db/transfac.rb, line 209 def sy field_fetch('SY') end
SZ Size (length (number of amino acids); calculated molecular mass SZ in kDa; experimental molecular mass (or range) in kDa SZ (experimental method) [Ref]
# File lib/bio/db/transfac.rb, line 232 def sz field_fetch('SZ') end