module Bio::Alignment::FactoryTemplate::WrapOutputTempfile
mix-in module
Private Instance Methods
_query_local(fn_in, opt, data_stdin = nil)
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Performs alignment
# File lib/bio/alignment.rb, line 2406 def _query_local(fn_in, opt, data_stdin = nil) begin tf_out = _prepare_tempfile() opt = _generate_options(fn_in, tf_out.path, opt) exec_local(opt, data_stdin) tf_out.open @output = tf_out.read ensure tf_out.close(true) if tf_out end @report = self.class::DEFAULT_PARSER.new(@output) @report end