module Bio::Alignment::FactoryTemplate::WrapOutputStdout

mix-in module

Private Instance Methods

_query_local(fn_in, opt, data_stdin = nil) click to toggle source

Performs alignment by specified filenames

# File lib/bio/alignment.rb, line 2393
def _query_local(fn_in, opt, data_stdin = nil)
  opt = _generate_options(fn_in, nil, opt)
  exec_local(opt, data_stdin)
  @output = @data_stdout
  @report = self.class::DEFAULT_PARSER.new(@output)
  @report
end