serv = Bio::Hinv::HitDefinition.new serv.query(“hit” => “HIT000000001”) puts serv.result puts serv.data_source_definition puts serv.cdna_rep_h_invitational puts serv.cdna_splicing_isoform_curation puts serv.data_source_db_reference_protein_motif_id puts serv.data_source_identity puts serv.data_source_coverage puts serv.data_source_homologous_species puts serv.data_source_similarity_category
# File lib/bio/io/hinv.rb, line 207 def cdna_rep_h_invitational @xml.elements['//CDNA_REP-H-INVITATIONAL'].text end
# File lib/bio/io/hinv.rb, line 210 def cdna_splicing_isoform_curation @xml.elements['//CDNA_SPLICING-ISOFORM_CURATION'].text end
# File lib/bio/io/hinv.rb, line 219 def data_source_coverage @xml.elements['//DATA-SOURCE_COVERAGE'].text.to_f end
# File lib/bio/io/hinv.rb, line 213 def data_source_db_reference_protein_motif_id @xml.elements['//DATA-SOURCE_DB-REFERENCE_PROTEIN-MOTIF-ID'].text end
# File lib/bio/io/hinv.rb, line 222 def data_source_homologous_species @xml.elements['//DATA-SOURCE_HOMOLOGOUS_SPECIES'].text end
# File lib/bio/io/hinv.rb, line 216 def data_source_identity @xml.elements['//DATA-SOURCE_IDENTITY'].text.to_f end
# File lib/bio/io/hinv.rb, line 225 def data_source_similarity_category @xml.elements['//DATA-SOURCE_SIMILARITY-CATEGORY'].text end
<?xml version=‘1.0’ encoding=‘UTF-8’?> <H-Inv>
<HIT_FUNCTION> <H-INVITATIONAL-ID>HIT000000001</H-INVITATIONAL-ID> <DATA-SOURCE_DEFINITION>Rho guanine nucleotide exchange factor 10.</DATA-SOURCE_DEFINITION> <CDNA_REP-H-INVITATIONAL>Representative transcript</CDNA_REP-H-INVITATIONAL> <CDNA_SPLICING-ISOFORM_CURATION></CDNA_SPLICING-ISOFORM_CURATION> <DATA-SOURCE_DB-REFERENCE_PROTEIN-MOTIF-ID>NP_055444</DATA-SOURCE_DB-REFERENCE_PROTEIN-MOTIF-ID> <DATA-SOURCE_IDENTITY>100.0</DATA-SOURCE_IDENTITY> <DATA-SOURCE_COVERAGE>100.0</DATA-SOURCE_COVERAGE> <DATA-SOURCE_HOMOLOGOUS_SPECIES>Homo sapiens</DATA-SOURCE_HOMOLOGOUS_SPECIES> <DATA-SOURCE_SIMILARITY-CATEGORY>Identical to known human protein(Category I).</DATA-SOURCE_SIMILARITY-CATEGORY> </HIT_FUNCTION>
</H-Inv>
# File lib/bio/io/hinv.rb, line 202 def result @xml.elements['//DATA-SOURCE_DEFINITION'].text end
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