Last Modified
  2013-07-27 23:01:16 +0000
Requires
  - bio/db
  - matrix

## Description

# bio/db/aaindex.rb - AAindex database class

Copyright | Copyright (C) 2001 KAWASHIMA Shuichi <s@bioruby.org>
Copyright | Copyright (C) 2006 Mitsuteru C. Nakao <n@bioruby.org>
License | The Ruby License

$Id:$

## Description

Classes for Amino Acid Index Database (AAindex and AAindex2).

- AAindex Manual: www.genome.jp/dbget-bin/show_man?aaindex

## Examples

    aax1 = Bio::AAindex.auto("PRAM900102.aaindex1")
    aax2 = Bio::AAindex.auto("DAYM780301.aaindex2")

    aax1 = Bio::AAindex1.new("PRAM900102.aaindex1")
    aax1.entry_id
    aax1.index

    aax2 = Bio::AAindex2.new("DAYM780301.aaindex2")
    aax2.entry_id
    aax2.matrix
    aax2.matrix[2,2]
    aax2.matrix('R', 'A')
    aax2['R', 'A']

## References

- www.genome.jp/aaindex/