The module provides references method.
REFERENCE -- Returns contents of the REFERENCE records as an Array of Bio::Reference objects.
# File lib/bio/db/kegg/common.rb, line 30 def references unless @data['REFERENCE'] ary = [] toptag2array(get('REFERENCE')).each do |ref| hash = Hash.new subtag2array(ref).each do |field| case tag_get(field) when /REFERENCE/ cmnt = tag_cut(field).chomp if /^\s*PMID\:(\d+)\s*/ =~ cmnt then hash['pubmed'] = $1 cmnt = $' end if cmnt and !cmnt.empty? then hash['comments'] ||= [] hash['comments'].push(cmnt) end when /AUTHORS/ authors = truncate(tag_cut(field)) authors = authors.split(/\, /) authors[-1] = authors[-1].split(/\s+and\s+/) if authors[-1] authors = authors.flatten.map { |a| a.sub(',', ', ') } hash['authors'] = authors when /TITLE/ hash['title'] = truncate(tag_cut(field)) when /JOURNAL/ journal = truncate(tag_cut(field)) case journal # KEGG style when /(.*) (\d*(?:\([^\)]+\))?)\:(\d+\-\d+) \((\d+)\)$/ hash['journal'] = $1 hash['volume'] = $2 hash['pages'] = $3 hash['year'] = $4 # old KEGG style when /(.*) (\d+):(\d+\-\d+) \((\d+)\) \[UI:(\d+)\]$/ hash['journal'] = $1 hash['volume'] = $2 hash['pages'] = $3 hash['year'] = $4 hash['medline'] = $5 # Only journal name and year are available when /(.*) \((\d+)\)$/ hash['journal'] = $1 hash['year'] = $2 else hash['journal'] = journal end end end ary.push(Reference.new(hash)) end @data['REFERENCE'] = ary #.extend(Bio::References::BackwardCompatibility) end @data['REFERENCE'] end
Generated with the Darkfish Rdoc Generator 2.