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public interface DistributionFactory
A thing that can make Distributions.
This decouples programs from needing to know what implementation of Distribution to instantiate for a given alphabet. It also lets you parameterise model creation for things like profile HMMs.
Nested Class Summary | |
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static class |
DistributionFactory.DefaultDistributionFactory
The default DistributionFactory implementation. |
Field Summary | |
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static DistributionFactory |
DEFAULT
The default DistributionFactory object. |
Method Summary | |
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Distribution |
createDistribution(Alphabet alpha)
Generate a new Distribution as requested. |
Field Detail |
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static final DistributionFactory DEFAULT
The default DistributionFactory object.
You may wish to alias this within your scripts with something like: DistributionFactory dFact = DistributionFactory.DEFAULT; dFact.createDistribution(...);
Method Detail |
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Distribution createDistribution(Alphabet alpha) throws IllegalAlphabetException
alpha
- the emission alphabet for the state
IllegalAlphabetException
- if the factory is unable to generate a
distribution for the required alphabet
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