ssaha
Class ResultPrinter

java.lang.Object
  extended by ssaha.ResultPrinter
All Implemented Interfaces:
org.biojava.bio.program.ssaha.SearchListener

public class ResultPrinter
extends Object
implements org.biojava.bio.program.ssaha.SearchListener


Nested Class Summary
 
Nested classes/interfaces inherited from interface org.biojava.bio.program.ssaha.SearchListener
org.biojava.bio.program.ssaha.SearchListener.Echo, org.biojava.bio.program.ssaha.SearchListener.FilterByLength, org.biojava.bio.program.ssaha.SearchListener.Tee, org.biojava.bio.program.ssaha.SearchListener.Wrapper
 
Constructor Summary
ResultPrinter(org.biojava.bio.program.ssaha.DataStore dataStore)
           
 
Method Summary
 void endSearch(String seqID)
           
 void hit(int hitID, int queryOffset, int hitOffset, int hitLength)
           
 void startSearch(String seqID)
           
 
Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Constructor Detail

ResultPrinter

public ResultPrinter(org.biojava.bio.program.ssaha.DataStore dataStore)
Method Detail

startSearch

public void startSearch(String seqID)
Specified by:
startSearch in interface org.biojava.bio.program.ssaha.SearchListener

endSearch

public void endSearch(String seqID)
Specified by:
endSearch in interface org.biojava.bio.program.ssaha.SearchListener

hit

public void hit(int hitID,
                int queryOffset,
                int hitOffset,
                int hitLength)
Specified by:
hit in interface org.biojava.bio.program.ssaha.SearchListener