class Bio::TRANSFAC
Constants
- DELIMITER
- TAGSIZE
Public Class Methods
new(entry)
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Calls superclass method
Bio::EMBLDB.new
# File lib/bio/db/transfac.rb, line 21 def initialize(entry) super(entry, TAGSIZE) end
Public Instance Methods
ac()
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AC Accession number (1 per entry)
AC T00001 in the case of FACTOR AC M00001 in the case of MATRIX AC R00001 in the case of SITE AC G000001 in the case of GENE AC C00001 in the case of CLASS AC 00001 in the case of CELL
# File lib/bio/db/transfac.rb, line 34 def ac unless @data['AC'] @data['AC'] = fetch('AC') end @data['AC'] end
Also aliased as: entry_id
cc()
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# File lib/bio/db/transfac.rb, line 52 def cc field_fetch('CC') end
Also aliased as: comment
dt()
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DT Date (1 per entry)
DT DD.MM.YYYY (created); ewi. DT DD.MM.YYYY (updated); mpr.
# File lib/bio/db/transfac.rb, line 47 def dt field_fetch('DT') end
Also aliased as: date
oc()
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# File lib/bio/db/transfac.rb, line 62 def oc field_fetch('OC') end
Also aliased as: org_class
os()
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# File lib/bio/db/transfac.rb, line 57 def os field_fetch('OS') end
Also aliased as: org_species
ra()
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# File lib/bio/db/transfac.rb, line 72 def ra field_fetch('RA') end
Also aliased as: ref_authors
rl()
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# File lib/bio/db/transfac.rb, line 82 def rl field_fetch('RL') end
Also aliased as: ref_data
rn()
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# File lib/bio/db/transfac.rb, line 67 def rn field_fetch('RN') end
Also aliased as: ref_no
rt()
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# File lib/bio/db/transfac.rb, line 77 def rt field_fetch('RT') end
Also aliased as: ref_title