Returns 'included' or 'not included'. If the value is 'included', Bio::TargetP::Report#prediction contains a valid value.
Returns a Hash of the prediction results.
{"Name"=>"MGI_2141503", "Loc."=>"_", "RC"=>3, "SP"=>0.271,
"other"=>0.844, "mTP"=>0.161, "cTP"=>0.031, "Length"=>640}
Keys: Name, Len, SP, mTP, other, Loc, RC Optional key for PLANT networks: cTP Optional key in Cleavage site: TPlen
Use 'Length' and 'Loc.' instead of 'Len' and 'Loc' respectively for the version 1.0 report.
Returns a Hash of the prediction results.
{"Name"=>"MGI_2141503", "Loc."=>"_", "RC"=>3, "SP"=>0.271,
"other"=>0.844, "mTP"=>0.161, "cTP"=>0.031, "Length"=>640}
Keys: Name, Len, SP, mTP, other, Loc, RC Optional key for PLANT networks: cTP Optional key in Cleavage site: TPlen
Use 'Length' and 'Loc.' instead of 'Len' and 'Loc' respectively for the version 1.0 report.
Returns the predicted localization signal:
S (Signal peptide)
M (mTP)
C (cTP)
*
_
# File lib/bio/appl/targetp/report.rb, line 97 def loc if @prediction['Loc'] @prediction['Loc'] # version 1.0 else @prediction['Loc.'] # version 1.1 end end
Returns the name of query sequence.
# File lib/bio/appl/targetp/report.rb, line 76 def name @prediction['Name'] end
Returns length of query sequence.
# File lib/bio/appl/targetp/report.rb, line 82 def query_len if @prediction['Len'] @prediction['Len'] else @prediction['Length'] end end
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