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Bio::DDBJ::REST::DDBJ

Description

DDBJ (DNA DataBank of Japan) entry retrieval functions.

Examples

see xml.nig.ac.jp/wabi/Method?serviceName=DDBJ&mode=methodList&lang=en

Public Instance Methods

countBasePair(accession) click to toggle source

Number and ratio of each base such as A,T,G,C.

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=DDBJ&methodName=countBasePair&mode=methodDetail


Arguments:

  • (required) accession: (String) accession

Returns

(String) tab-deliminated text

# File lib/bio/io/ddbjrest.rb, line 167
def countBasePair(accession); end
get(accessionList, paramList) click to toggle source

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=DDBJ&methodName=get&mode=methodDetail

# File lib/bio/io/ddbjrest.rb, line 171
def get(accessionList, paramList); end
getAllFeatures(accession) click to toggle source

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=DDBJ&methodName=getAllFeatures&mode=methodDetail

# File lib/bio/io/ddbjrest.rb, line 175
def getAllFeatures(accession); end
getFFEntry(accession) click to toggle source

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=DDBJ&methodName=getFFEntry&mode=methodDetail

# File lib/bio/io/ddbjrest.rb, line 179
def getFFEntry(accession); end
getRelatedFeatures(accession, start, stop) click to toggle source

xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=DDBJ&methodName=getRelatedFeatures&mode=methodDetail

# File lib/bio/io/ddbjrest.rb, line 183
def getRelatedFeatures(accession, start, stop); end
getRelatedFeaturesSeq(accession, start, stop) click to toggle source

see xml.nig.ac.jp/wabi/Method?&lang=en&serviceName=DDBJ&methodName=getRelatedFeaturesSeq&mode=methodDetail

# File lib/bio/io/ddbjrest.rb, line 187
def getRelatedFeaturesSeq(accession, start, stop); end

[Validate]

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