Copyright |
Copyright (C) 2003, 2007 Naohisa Goto <ng@bioruby.org> |
License |
The Ruby License |
$Id: report.rb,v 1.13 2007/07/16 12:21:39 ngoto Exp $
MAFFT result parser class. MAFFT is a very fast multiple sequence alignment software.
Since a result of MAFFT is simply a multiple-fasta format, the significance of this class is to keep standard form and interface between Bio::ClustalW::Report.
Bio::Alignment::MultiFastaFormat is a generic data class for fasta-formatted multiple sequence alignment data. Bio::MAFFT::Report inherits Bio::Alignment::MultiFastaFormat.
Katoh, K. Misawa, K. Kuma and T. Miyata.
MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30: 3059-3066, 2002. nar.oupjournals.org/cgi/content/abstract/30/14/3059