Bio.Sequence.SeqData

Data structure

data Sequence t

type Offset

type SeqData

type Qual

type QualData

Accessor functions

(!)

seqlength

seqlabel

seqheader

seqdata

(?)

hasqual

seqqual

Adding information to header

appendHeader

setHeader

Converting to and from [Char]

fromStr

toStr

Sequence utilities

defragSeq

seqmap

castSeq

Nucleotide functionality

compl

revcompl

revcompl'

data Nuc

castToNuc

Protein functionality

data Amino

translate

fromIUPAC

toIUPAC

castToAmino

Display a nicely formated sequence.

putSeqLn

seqToStr

Default type for sequences

data Unknown