Last Modified
  2013-06-29 03:40:10 +0000
Requires
  - stringio
  - bio/db/fasta
  - bio/io/flatfile
  - bio/alignment
  - bio/appl/mafft

## Description

# bio/appl/mafft/report.rb - MAFFT report class

Copyright | Copyright (C) 2003, 2007 Naohisa Goto <ng@bioruby.org>
License | The Ruby License

    $Id: report.rb,v 1.13 2007/07/16 12:21:39 ngoto Exp $

MAFFT result parser class. MAFFT is a very fast multiple sequence alignment software.

Since a result of MAFFT is simply a multiple-fasta format, the significance of this class is to keep standard form and interface between Bio::ClustalW::Report.

Bio::Alignment::MultiFastaFormat is a generic data class for fasta-formatted multiple sequence alignment data. Bio::MAFFT::Report inherits Bio::Alignment::MultiFastaFormat.

## References

- 1. Katoh, K. Misawa, K. Kuma and T. Miyata.

  MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30: 3059-3066, 2002. nar.oupjournals.org/cgi/content/abstract/30/14/3059

- www.biophys.kyoto-u.ac.jp/~katoh/programs/align/mafft/