seq
Class MotifFinder2
java.lang.Object
seq.MotifFinder2
public class MotifFinder2
- extends Object
Modified version of MotifFinder.java
This program will search a fasta file for a motif.
It will match motifs and/or sequences containing ambiguity symbols.
- Author:
- Matthew Pocock, Andy Hammer, Mark Schreiber
Method Summary |
static void |
main(String[] args)
Run the Program |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
MotifFinder2
public MotifFinder2()
main
public static void main(String[] args)
throws org.biojava.bio.BioException,
IOException
- Run the Program
- Parameters:
args
- a motif (eg acgtnnc) and a fasta file
- Throws:
org.biojava.bio.BioException
IOException