Uses of Package
org.biojava.directory

Packages that use org.biojava.directory
org.biojava.bio.program.das Development client for the Distributed Annotation System. 
org.biojava.bio.seq.db.biofetch Client for the OBDA BioFetch protocol. 
org.biojava.bio.seq.db.biosql General purpose Sequence storage in a relational database. 
org.biojava.bio.seq.db.flat Support for OBDA flatfile databases. 
org.biojava.directory Open Bio Sequence Database Access (OBDA) registry support. 
 

Classes in org.biojava.directory used by org.biojava.bio.program.das
RegistryException
          A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.
SequenceDBProvider
          Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.
 

Classes in org.biojava.directory used by org.biojava.bio.seq.db.biofetch
RegistryException
          A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.
SequenceDBProvider
          Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.
 

Classes in org.biojava.directory used by org.biojava.bio.seq.db.biosql
RegistryException
          A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.
SequenceDBProvider
          Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.
 

Classes in org.biojava.directory used by org.biojava.bio.seq.db.flat
RegistryException
          A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.
SequenceDBProvider
          Interfaces for named resources that can provide sequences via a database given some configuration information as defined by the OBDA standard.
 

Classes in org.biojava.directory used by org.biojava.directory
Registry
          Registry is a factory which gets implementations of the BioJava SequenceDBLite interface.
RegistryConfiguration
          The BioDirectory Registry is a simple system for specifying where to find services which provide sequence databases.
RegistryException
          A RegistryException thrown when the registry cannot find an implementation of a requested SequenceDB.